G260691


Basic Information

Item Value
gene id G260691
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24725847 ~ 24728397 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308703
caccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaacaaacactacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacaccacacacaaataaacactactacacaccaacaaacaacactacagacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacaccacacacaaataaacactactacacaccaacaaacaacactacagacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactac
>TU308704
caccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaacaaacactacacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacaccacacacaaataaacactactacacaccaacaaacaacactacagacaaataaacactactacacactaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaaaactacagacaaataaacactactacacaccaacaaacaacactacacacaaataaacactactacacaccaacaaacaacactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308703 True 634 lncRNA 0.35 4 24725847 24728397
TU308704 False 634 lncRNA 0.35 3 24725847 24728397

Neighbor

gene id symbol gene type direction distance location
sgms2b LOC108275722 coding upstream 612 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 27414 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 35952 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 102042 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 112758 24599158 ~ 24613089 (+)
LOC117599303 NA coding downstream 68832 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 73495 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 74774 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 79120 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 128183 24856580 ~ 24868832 (+)
LOC113530849 NA non-coding upstream 19732 24705287 ~ 24706115 (+)
G260677 NA non-coding upstream 108630 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 121788 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 196932 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 246047 24477566 ~ 24479800 (+)
LOC117599308 NA non-coding downstream 7326 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 17384 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 40525 24768922 ~ 24771134 (+)
G260705 NA non-coding downstream 46118 24774515 ~ 24775224 (+)
G260711 NA non-coding downstream 77559 24805956 ~ 24806167 (+)
ddx58 ddx58 other upstream 89718 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 272309 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 456580 24268577 ~ 24269267 (+)
G260415 NA other upstream 693123 24032227 ~ 24032724 (+)
G259993 NA other upstream 1336533 23387538 ~ 23389314 (+)

Expression


Co-expression Network