G260713


Basic Information

Item Value
gene id G260713
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24827323 ~ 24829045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308739
gattaattttacgATGCCTTTATGAACTTTTTGGAGTTTGAAAGTTTTGGTTACATGGACTGTTAATGGAGGGACAGAAATCTCCCAGCTTTCATTAAAAGGTTTGGAACGACATGATGTTGAGTAActgatgacagaattttcatttttgggtgaactcTCGCTTTAAGTGATCATGTGGTGACGTATATGCAAGCTAcgaaatatataaaattcttATCAACTGTGACCCACTTGTGTCATTTTTACCATcaaattaatacatttctatCCAGCACATTATTTTGTTCAGTCTGACAATCAACAGTCATTCTAGCTTTCTTAGATATAATATTTCTAAATTACAACTAATACCTaagaatctttaaaataaatcagaaacaaTCAGGAACGTATTAATGCCTCAAGTAACatttcttaaaagaaaaacagaagtcCGGTAAAATAACTTTACTTTTTCGGTGTATAAAGTGAGTCATAAGTCAATAAAACGAACCCAGTTTAGAGCTGACgatgttttaaataaaggtgCTGAAGTAACTGTAAGAGGTTAGATTGCTAAATTATGTGCTGGAATGTAGATATTTTGAGTATTATTTCGGTGTTTATGTTAGCTAACATCCCGTAGCATGACTGGTTTGTAGTGCGTGTTTCGTTTTAACAGATAAACGGGTATTGACCAGAGTGCCGTCTCCATGACAACAGCGTCACGGAGTTCGAGCCACTCTTAAATCAGCTAGAGTTTAGTTTAGGGGGTTTATTTGTGCAGAGTTTTAGCTTTTTTGTTGACTGTAGGTTCATGTGTAGTTGTCGAAAGAAGTTAACAAAAATTTCAAGTGTTCTTGCATTGAATTCTTAATTTATTGACCTCGTTCAGATCTGTATCGGTGTgatatattgttataattatagACTGTTGTAACAGTATGTAGAATTTGTGGAGTAATAATCACCTGAATCAACAGTATCTACTCCCAGCTTCACATTTCAAAGAGGACGACATTAAACCCAtacacataataaaataaatacaggtctgtttactgttttacacaaaacacTTTTCCAAAATTCCAAATCAATCCACATTTTATGTTTCACATCCctaaaattaatcaaaaaataataaaaaaaaaacaaaacaaaaaaaaaccttgtttaAAAGATTTTAGTGAAAAAGATTTTCATCAAAAACTCAAATATCTCATCATTCAGCTGTGTATGTTGACTTCCTGTCAATCAAGTGGCAccaaatttttatatttcaaccCCAACAACtttcataaattaaatgtaattcagATGAAATTCACAAGAACAACAGCTCTTTTGAACCAAGGACTTGAACAATGTGCAGTAAGATGATTTGGTTCTGTTTGACCAGAATGATTTTGTTTACAGATTTGCACTCAGGAGaaatttgaaaatttaaaaataaatataaatgggtTTGTTAGAGGAATCAGTCTTCAGTAGTTCATCAGAACATCATCAATGTAGCAGATATCAAATGACCACCAAACATGGAGATAACAACAATGACGATATTGTTGAACTTCAGTCAATCGCatgattaattaaatgtaaaggtTTTCAGTGTGGATTTATGAGCAGCAGCTTTGCACAAACCTTTGTGTTGCGTTTGTGTGTAATGAACAAACCTTTAAAAGCAATACCGTACATTAAGATCAGATTTACTCATTTAGAGTCATGCCAGattaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308739 True 1723 lncRNA 0.33 1 24827323 24829045

Neighbor

gene id symbol gene type direction distance location
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 640 24807517 ~ 24826683 (+)
LOC117599305 NA coding upstream 22910 24803171 ~ 24804413 (+)
LOC117599304 LOC108275642 coding upstream 24794 24801892 ~ 24802529 (+)
LOC117599303 NA coding upstream 25715 24797229 ~ 24801608 (+)
sgms2b LOC108275722 coding upstream 102088 24715017 ~ 24725235 (+)
txk LOC108275609 coding downstream 27535 24856580 ~ 24868832 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding downstream 41624 24870669 ~ 24881640 (+)
LOC113525303 LOC108275832 coding downstream 170900 24999945 ~ 25007817 (+)
LOC117599307 NA coding downstream 182051 25011096 ~ 25013271 (+)
hmgb2b LOC108276448 coding downstream 214313 25043358 ~ 25046146 (+)
G260711 NA non-coding upstream 21156 24805956 ~ 24806167 (+)
G260705 NA non-coding upstream 52099 24774515 ~ 24775224 (+)
G260664 NA non-coding upstream 56189 24768922 ~ 24771134 (+)
G260697 NA non-coding upstream 75515 24745781 ~ 24751808 (+)
LOC117599308 NA non-coding upstream 90950 24735723 ~ 24736373 (+)
G260718 NA non-coding downstream 735 24829780 ~ 24830030 (+)
G260725 NA non-coding downstream 9370 24838415 ~ 24839487 (+)
G260736 NA non-coding downstream 35117 24864162 ~ 25022554 (+)
G260748 NA non-coding downstream 80674 24909719 ~ 24910463 (+)
G260751 NA non-coding downstream 85209 24914254 ~ 24924554 (+)
ddx58 ddx58 other upstream 191194 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 373785 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 558056 24268577 ~ 24269267 (+)
G260415 NA other upstream 794599 24032227 ~ 24032724 (+)
G259993 NA other upstream 1438009 23387538 ~ 23389314 (+)

Expression


Co-expression Network