G260718


Basic Information

Item Value
gene id G260718
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24829780 ~ 24830030 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308744
TCCTGCTGACTCGCACCACCGAACCCCACAGTGTGTGTCTCTCCAGCTGTTCCACTGAGTCTCATCCTCCTGCCATTCTGATAGGTCACTGATCTCATACCCTGCTTTCTGATTGGCCGGTTTCTCTGCTCCGTAGTTCACCAGGAGGCTGTCCAGGCTGCAGGCTGAGCGCCCAAGCTGAGCGTCCTGCTCTGGAGCTGGGTACGGGTTCTGCACCTTGCTCACAGGCCTCAGAGACATCAGCACTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308744 True 251 lncRNA 0.59 1 24829780 24830030

Neighbor

gene id symbol gene type direction distance location
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 3097 24807517 ~ 24826683 (+)
LOC117599305 NA coding upstream 25367 24803171 ~ 24804413 (+)
LOC117599304 LOC108275642 coding upstream 27251 24801892 ~ 24802529 (+)
LOC117599303 NA coding upstream 28172 24797229 ~ 24801608 (+)
sgms2b LOC108275722 coding upstream 104545 24715017 ~ 24725235 (+)
txk LOC108275609 coding downstream 26550 24856580 ~ 24868832 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding downstream 40639 24870669 ~ 24881640 (+)
LOC113525303 LOC108275832 coding downstream 169915 24999945 ~ 25007817 (+)
LOC117599307 NA coding downstream 181066 25011096 ~ 25013271 (+)
hmgb2b LOC108276448 coding downstream 213328 25043358 ~ 25046146 (+)
G260713 NA non-coding upstream 735 24827323 ~ 24829045 (+)
G260711 NA non-coding upstream 23613 24805956 ~ 24806167 (+)
G260705 NA non-coding upstream 54556 24774515 ~ 24775224 (+)
G260664 NA non-coding upstream 58646 24768922 ~ 24771134 (+)
G260697 NA non-coding upstream 77972 24745781 ~ 24751808 (+)
G260725 NA non-coding downstream 8385 24838415 ~ 24839487 (+)
G260736 NA non-coding downstream 34132 24864162 ~ 25022554 (+)
G260748 NA non-coding downstream 79689 24909719 ~ 24910463 (+)
G260751 NA non-coding downstream 84224 24914254 ~ 24924554 (+)
G260737 NA non-coding downstream 88991 24919021 ~ 24934941 (+)
ddx58 ddx58 other upstream 193651 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 376242 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 560513 24268577 ~ 24269267 (+)
G260415 NA other upstream 797056 24032227 ~ 24032724 (+)
G259993 NA other upstream 1440466 23387538 ~ 23389314 (+)

Expression


Co-expression Network