G260736


Basic Information

Item Value
gene id G260736
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24864162 ~ 25022554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308764
cacacacacacacacacacacacgcgcacacacgcacacacacacgcacacacacacctggagggGAACTGCAGCGTGGCGTAGTGGGAGTCGGTCCACGTGTGGTCCATGTGAAGGTTCTGGAAGCTCTGCAGAATCTCCATGGCTAAAGCATGACCCTCTGAGGACCCCGCAGGGTGGGCCGTCCTGCTCACTCGCCTGATCAcaaacatcaaacacatcaaaccGGTTCTAGAGCCGCTGgtcacacaccatctcacacctTTAAACAGTAACGATCTGTCATTAATAACATTTACTccagtgtgtgtctctgagtgtgtgtgtgtgtgtgtgtatgagggaaGGTGTCCACGTTGagcgtgtatatatatatatatatatatatatatatgcgtgtTCTAACTGGACTGTGTCCTCGATCTTCTCCTCCTGCAGGTATTTCTTCAGCATGTCTCTCAGTTCCCCCAGGTACATCCCCCCCGTCTTTGGAGAATGGTCCGGTCCGGCCGTGTCATCGACGAGCACCAGCTCCCCCTCGTCCACACAGAGAGGGCACATTCCATGAGACGACACGTACCCCAGCAGGAATGCTGT

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU308764 True 597 lncRNA 0.52 2 24864162 25022554

Neighbor

gene id symbol gene type direction distance location
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 37479 24807517 ~ 24826683 (+)
LOC117599305 NA coding upstream 59749 24803171 ~ 24804413 (+)
LOC117599304 LOC108275642 coding upstream 61633 24801892 ~ 24802529 (+)
LOC117599303 NA coding upstream 62554 24797229 ~ 24801608 (+)
sgms2b LOC108275722 coding upstream 138927 24715017 ~ 24725235 (+)
hmgb2b LOC108276448 coding downstream 20804 25043358 ~ 25046146 (+)
LOC117599273 ccdc171 coding downstream 47361 25069915 ~ 25072941 (+)
G260725 NA non-coding upstream 24675 24838415 ~ 24839487 (+)
G260718 NA non-coding upstream 34132 24829780 ~ 24830030 (+)
G260713 NA non-coding upstream 35117 24827323 ~ 24829045 (+)
G260711 NA non-coding upstream 57995 24805956 ~ 24806167 (+)
G260705 NA non-coding upstream 88938 24774515 ~ 24775224 (+)
G260812 anp32b,LOC108275503,LOC108412630 non-coding downstream 24997 25047551 ~ 25053519 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding downstream 32594 25055148 ~ 25060232 (+)
ddx58 ddx58 other upstream 228033 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 410624 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 594895 24268577 ~ 24269267 (+)
G260415 NA other upstream 831438 24032227 ~ 24032724 (+)
G259993 NA other upstream 1474848 23387538 ~ 23389314 (+)

Expression


Co-expression Network