G260759


Basic Information

Item Value
gene id G260759
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24936921 ~ 24983803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308800
ccacacacacacacacacacacacacacacacacacacacacacacacacacagggctgtaAGGCATTGTTGATGAGATGAGTTTGTCCTGTGATAGCGCTGAAAGGCTGAGGAGATTCTTCACACACTTCGCCAGGAGTCGTGATTCCGCAGCTTTTTCCGCAGCTTCTCGCTTTACGCCATCCCATAATTCCCGTAGCTAGCAGCCGTTCTGTAGCTAAAACGTACGAGAATACGTGATGTCCCGCCACGTCTCAGCTtgtgtgtgacatcactgaaaAACGTATCTGATCTCTGATGAAGTTTCTCCTCACGTTCTTGAACGTTCCACGTGGACCACCAAacatccagccaatcaggacGAGGAGGCGGATCTACACATCTTTCAGTCCATGGCCTTGCACTAGCGCTCATGTGCATGTGgtttgggggcgtggcttttAAGGGAACATTGGAGGGAGGGGCTTATAGCGTAATCACTGATTGcatgtataaaacacacacacacacacacacacacacacacatacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308800 True 533 lncRNA 0.50 3 24936921 24983803

Neighbor

gene id symbol gene type direction distance location
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding upstream 55281 24870669 ~ 24881640 (+)
txk LOC108275609 coding upstream 68089 24856580 ~ 24868832 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 110238 24807517 ~ 24826683 (+)
LOC117599305 NA coding upstream 132508 24803171 ~ 24804413 (+)
LOC117599304 LOC108275642 coding upstream 134392 24801892 ~ 24802529 (+)
LOC113525303 LOC108275832 coding downstream 16142 24999945 ~ 25007817 (+)
LOC117599307 NA coding downstream 27293 25011096 ~ 25013271 (+)
hmgb2b LOC108276448 coding downstream 59555 25043358 ~ 25046146 (+)
LOC117599273 ccdc171 coding downstream 86112 25069915 ~ 25072941 (+)
G260737 NA non-coding upstream 1980 24919021 ~ 24934941 (+)
G260751 NA non-coding upstream 12367 24914254 ~ 24924554 (+)
G260748 NA non-coding upstream 26458 24909719 ~ 24910463 (+)
G260725 NA non-coding upstream 97434 24838415 ~ 24839487 (+)
G260718 NA non-coding upstream 106891 24829780 ~ 24830030 (+)
G260796 tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171 non-coding downstream 31417 25015220 ~ 25016939 (+)
G260812 anp32b,LOC108275503,LOC108412630 non-coding downstream 63748 25047551 ~ 25053519 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding downstream 71345 25055148 ~ 25060232 (+)
ddx58 ddx58 other upstream 300792 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 483383 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 667654 24268577 ~ 24269267 (+)
G260415 NA other upstream 904197 24032227 ~ 24032724 (+)
G259993 NA other upstream 1547607 23387538 ~ 23389314 (+)

Expression


Co-expression Network