G260796 (tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171)


Basic Information

Item Value
gene id G260796
gene name tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25015220 ~ 25016939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308838
gaaagtaaaataatttattgGAGTTCGTCTCACCAGCCCTCTGTGTCATCATCCTCatgatcaataatcaataatcaataatcaataatatcaCAAACACAGAGCATGAACATCATCAGATACAGCACATGCCTTCTCTGAGGGAGCTACACAGAGCTACACAATGCTTCTGACATCAGAGCTACAGAGGAAGTGATGTCACACCGGCGGACTTTGATCTCCATTATCACTGGCAAAGACAGAGCCCGGTGATGTCACAGGCCAGGGGTGTGGCTCTGACATCACGGGGATGATTGATAGCAGATGCTGCTTTTTGATTGGACGACAGTATGACTGTCATAATTATGAGAGACACTGCTCTCGATAATTACTACTTCTATTAACAACATTATCACTCagtaataaaaaagaattacaACGTAATCATAACTGTCTATTAATCAGTAATTAACGAGAGAAActgccagacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacatacacgcatacacacacacacatacacacacacacgcaagttTTTGTAGAATATGTTGTGATGGTTATGGGCTAACTCCAGGTTGTGATGGTATTAGAGTAAACTCTAGCTTTGGGAATCCCAGAAATGGGTTGTGAGGGTTCCATGTGTTCTAGAGTGAGTTGTGAATTTGTGAAATAGTCTGGAAAAGGTTCTCGAGTTTCTAGAACTGGCTGTCTGAGTGGTTCTGACATTTGTAGAACCGGTTTTGAAAGTGCCAGATGTGCAACAATGCCATGTGAATTTTTCACAACATGCTGTGACACTTTGTAGAAGAAACTGTGCGGATTCTAGAACAGGGTCGTGATGGTTCTAGAACAGTCTGAGAATAGTCTAGAAGGAGTTGTCGAGTTGTCCAGGTTCTAGAATGTGTTGTAAATGACCTCACGGGGTTGTGAATATTCATGGGACGTAGTAAATGTTCTAGAATGGGATGTCAATGGTTCTGACAGGATGTGAAGGTTCTAGAATGGGTAGTGAAGGTTCTAGAATGGTATCTGAATGCCCTAAAATAAATGgagcatttataaatgtaaatgtttataaatgttttgggAGCACTGAAGGTTCTAGAAAGAAAGGTTCTGATTGTGCAACTTCCAGAAGGAGTTATGCAGAATGTTCTAGAATGGTTTGTGGATGGTGTTGAGAGATTGTGAAGCTTTTAGAGTGGAATGTAAATGTTCTACAGAGGTTACAGCAGGGCTCTAAAGGGTCCAAACGGCTCCTGAAGGTTTTTGTGAAGGAATTTTTTTAGAAGGGATTTTGCAGGTTCTAGAAAAGGCTTGGAACAGTTTTGAGTTCTGAATGGTTGGGCAGGGTAGTTAAGGTTCTAGAACGGGTTGTCGATGTTCCAGACGTCACCGCTCAGCGCGTTGGCCGCTCCCTGCAGTGTCCAGGTGAACAGCGCGAGCTGGCGGCGGAAGCGAGCCTCGTGGAACAGGTGAGGATGAGAACGCAGCCGGGAGAGATGCTCAGTGAGCGCACTCAGAGTGTGTTCACCACGACCATGCAGCACGTGGCGGAATGGAGTCTCCACCACTGACACGTACTGAGACAGGAAGTAGTactccacctacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU308839
gaaagtaaaataatttattgGAGTTCGTCTCACCAGCCCTCTGTGTCATCATCCTCatgatcaataatcaataatcaataatcaataatatcaCAAACACAGAGCATGAACATCATCAGATACAGCACATGCCTTCTCTGAGGGAGCTACACAGAGCTACACAATGCTTCTGACATCAGAGCTACAGAGGAAGTGATGTCACACCGGCGGACTTTGATCTCCATTATCACTGGCAAAGACAGAGCCCGGTGATGTCACAGGCCAGGGGTGTGGCTCTGACATCACGGGGATGATTGATAGCAGATGCTGCTTTTTGATTGGACGACAGTATGACTGTCATAATTATGAGAGACACTGCTCTCGATAATTACTACTTCTATTAACAACATTATCACTCagtaataaaaaagaattacaACGTAATCATAACTGTCTATTAATCAGTAATTAACGAGAGAAActgccagacacacacacacacacacacacacacacacacatacacgcatacacacacacacatacacacacacacgcaagttTTTGTAGAATATGTTGTGATGGTTATGGGCTAACTCCAGGTTGTGATGGTATTAGAGTAAACTCTAGCTTTGGGAATCCCAGAAATGGGTTGTGAGGGTTCCATGTGTTCTAGAGTGAGTTGTGAATTTGTGAAATAGTCTGGAAAAGGTTCTCGAGTTTCTAGAACTGGCTGTCTGAGTGGTTCTGACATTTGTAGAACCGGTTTTGAAAGTGCCAGATGTGCAACAATGCCATGTGAATTTTTCACAACATGCTGTGACACTTTGTAGAAGAAACTGTGCGGATTCTAGAACAGGGTCGTGATGGTTCTAGAACAGTCTGAGAATAGTCTAGAAGGAGTTGTCGAGTTGTCCAGGTTCTAGAATGTGTTGTAAATGACCTCACGGGGTTGTGAATATTCATGGGACGTAGTAAATGTTCTAGAATGGGATGTCAATGGTTCTGACAGGATGTGAAGGTTCTAGAATGGTATCTGAATGCCCTAAAATAAATGgagcatttataaatgtaaatgtttataaatgttttgggAGCACTGAAGGTTCTAGAAAGAAAGGTTCTGATTGTGCAACTTCCAGAAGGAGTTATGCAGAATGTTCTAGAATGGTTTGTGGATGGTGTTGAGAGATTGTGAAGCTTTTAGAGTGGAATGTAAATGTTCTACAGAGGTTACAGCAGGGCTCTAAAGGGTCCAAACGGCTCCTGAAGGTTTTTGTGAAGGAATTTTTTTAGAAGGGATTTTGCAGGTTCTAGAAAAGGCTTGGAACAGTTTTGAGTTCTGAATGGTTGGGCAGGGTAGTTAAGGTTCTAGAACGGGTTGTCGATGTTCCAGACGTCACCGCTCAGCGCGTTGGCCGCTCCCTGCAGTGTCCAGGTGAACAGCGCGAGCTGGCGGCGGAAGCGAGCCTCGTGGAACAGGTGAGGATGAGAACGCAGCCGGGAGAGATGCTCAGTGAGCGCACTCAGAGTGTGTTCACCACGACCATGCAGCACGTGGCGGAATGGAGTCTCCACCACTGACACGTACTGAGACAGGAAGTAGTactccacctacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU308840
gaaagtaaaataatttattgGAGTTCGTCTCACCAGCCCTCTGTGTCATCATCCTCatgatcaataatcaataatcaataatcaataatatcaCAAACACAGAGCATGAACATCATCAGATACAGCACATGCCTTCTCTGAGGGAGCTACACAGAGCTACACAATGCTTCTGACATCAGAGCTACAGAGGAAGTGATGTCACACCGGCGGACTTTGATCTCCATTATCACTGGCAAAGACAGAGCCCGGTGATGTCACAGGCCAGGGGTGTGGCTCTGACATCACGGGGATGATTGATAGCAGATGCTGCTTTTTGATTGGACGACAGTATGACTGTCATAATTATGAGAGACACTGCTCTCGATAATTACTACTTCTATTAACAACATTATCACTCagtaataaaaaagaattacaACGTAATCATAACTGTCTATTAATCAGTAATTAACGAGAGAAActgccagacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacatacacgcatacacacacacacatacacacacacacgcaagttTTTGTAGAATATGTTGTGATGGTTATGGGCTAACTCCAGGTTGTGATGGTATTAGAGTAAACTCTAGCTTTGGGAATCCCAGAAATGGGTTGTGAGGGTTCCATGTGTTCTAGAGTGAGTTGTGAATTTGTGAAATAGTCTGGAAAAGGTTCTCGAGTTTCTAGAACTGGCTGTCTGAGTGGTTCTGACATTTGTAGAACCGGTTTTGAAAGTGCCAGATGTGCAACAATGCCATGTGAATTTTTCACAACATGCTGTGACACTTTGTAGAAGAAACTGTGCGGATTCTAGAACAGGGTCGTGATGGTTCTAGAACAGTCTGAGAATAGTCTAGAAGGAGTTGTCGAGTTGTCCAGGTTCTAGAATGTGTTGTAAATGACCTCACGGGGTTGTGAATATTCATGGGACGTAGTAAATGTTCTAGAATGGGATGTCAATGGTTCTGACAGGATGTGAAGGTTCTAGAATGGGTAGTGAAGGTTCTAGAATGGTATCTGAATGCCCTAAAATAAATGgagcatttataaatgtaaatgtttataaatgttttgggAGCACTGAAGGTTCTAGAAAGAAAGGTTCTGATTGTGCAACTTCCAGAAGGAGTTATGCAGAATGTTCTAGAATGGTTTGTGGATGGTGTTGAGAGATTGTGAAGCTTTTAGAGTGGAATGTAAATGTTCTACAGAGGTTACAGCAGGGCTCTAAAGGGTCCAAACGGCTCCTGAAGGTTTTTGTGAAGGAATTTTTTTAGAAGGGATTTTGCAGGTTCTAGAAAAGGCTTGGAACAGTTTTGAGTTCTGAATGGTTGGGCAGGGTAGTTAAGGTTCTAGAACGGGTTGTCGATGTTCCAGACGTCACCGCTCAGCGCGTTGGCCGCTCCCTGCAGTGTCCAGGTGAACAGCGCGAGCTGGCGGCGGAAGCGAGCCTCGTGGAACAGGTGAGGATGAGAACGCAGCCGGGAGAGATGCTCAGTGAGCGCACTCAGAGTGTGTTCACCACGACCATGCAGCACGTGGCGGAATGGAGTCTCCACCACTGACACGTACTGAGACAGGAAGTAGTactccacctacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
tfr2 Predicted to enable transferrin receptor activity. Acts upstream of or within iron ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver. Used to study hemochromatosis type 3. Human ortholog(s) of this gene implicated in hemochromatosis and hemochromatosis type 3. Orthologous to human TFR2 (transferrin receptor 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308838 True 1699 lncRNA 0.44 2 25015220 25016939
TU308839 False 1650 lncRNA 0.44 3 25015220 25016939
TU308840 False 1699 lncRNA 0.44 2 25015220 25016939

Neighbor

gene id symbol gene type direction distance location
LOC117599307 NA coding upstream 1949 25011096 ~ 25013271 (+)
LOC113525303 LOC108275832 coding upstream 7403 24999945 ~ 25007817 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding upstream 133580 24870669 ~ 24881640 (+)
txk LOC108275609 coding upstream 146388 24856580 ~ 24868832 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 188537 24807517 ~ 24826683 (+)
hmgb2b LOC108276448 coding downstream 26419 25043358 ~ 25046146 (+)
LOC117599273 ccdc171 coding downstream 52976 25069915 ~ 25072941 (+)
G260759 NA non-coding upstream 31417 24936921 ~ 24983803 (+)
G260761 NA non-coding upstream 77199 24937479 ~ 24938021 (+)
G260737 NA non-coding upstream 80279 24919021 ~ 24934941 (+)
G260751 NA non-coding upstream 90666 24914254 ~ 24924554 (+)
G260748 NA non-coding upstream 104757 24909719 ~ 24910463 (+)
G260812 anp32b,LOC108275503,LOC108412630 non-coding downstream 30612 25047551 ~ 25053519 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding downstream 38209 25055148 ~ 25060232 (+)
ddx58 ddx58 other upstream 379091 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 561682 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 745953 24268577 ~ 24269267 (+)
G260415 NA other upstream 982496 24032227 ~ 24032724 (+)
G259993 NA other upstream 1625906 23387538 ~ 23389314 (+)

Expression


Co-expression Network