G260812 (anp32b,LOC108275503,LOC108412630)


Basic Information

Item Value
gene id G260812
gene name anp32b,LOC108275503,LOC108412630
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25047551 ~ 25053519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308862
tgactcttagaaaacacattttatttacaaagtcTGTACTCAATTtggatgaaaaacagaaataacggaacaaatgtataaaaaaaaaaaaaagaacttcaaCATGGGGTCtgagtgggatttaaaaaaataacacctCAGTGTGATCTAACATTAAaactcatctcacacacacacgtctctctgacacacacacacacacacacacacacacacacactttgatacacgcacacacaaaacacgAAACTcaatcatcatcctcatcatcatcttcatcctcagGGTCTCgtttcctcttttctcctttACACTCGTCCTCATcttcctcctcatcttcatcatcgtcatcctcatcatcctcctgaCCCGAGTCTTCCTCcTCATCTCCACTCgcctcttcatcctcatcctcctcatcatcatcattttcctcgtcctcatcttcctctccatcttcatcctcatcctcgtCACCTCCCTCTGCGTCCGAGTCGCTCACCTCTCGGTCCTCGGGGTCGTAACCGTCCAGGTAGGTGATTTGGGGGAGGAGCTTAAACACACTCGCCCTGTAATCATCCAGGGTCGTGACCTCACAGTTAAACAGGTCCAGACTCTTTAGACGGGGCAGATCcctCAGTGGCTCCAGCATGCTCAGGTCTTTCAGTTTGTTGCCGCTCAGGTTGAGGTGTGTGAGGTTGGGCAGCTTCTCCGCCAGAATCTCCAGACCAGCCGAGATCCGGTTATCACTCAgctccaaCTTCTTGAGTTTGGGCAGTTTGGGGAGGTTGGAGATCGACGTCAGACCCACGTTAATCAGACTGAGGAACTCCAGATTCACAAACTCGGATGTCAGACCCTCGATCTTCCCTTCATCAGACCGACAGTTATCCAGCACCaactcacacacGTCTGACGGCGTCCTGTTCCGCAGCTCCAGGTGAATCCTCTTCTTCATGTCCATGTTGTGAGGAATAAATGAGGAATAAAGCGAGTTTAGTGTGAGATGAGAGTGAAGCAGCAGAGAAACGCACACAATCACACGAGTTTAACATGAAGCTCAGcctcttcttctg

Function

symbol description
anp32b Predicted to enable histone binding activity. Predicted to be involved in regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; hematopoietic system; nervous system; optic vesicle; and ventral mesoderm. Orthologous to human ANP32B (acidic nuclear phosphoprotein 32 family member B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308862 True 1076 lncRNA 0.48 7 25047551 25053519

Neighbor

gene id symbol gene type direction distance location
hmgb2b LOC108276448 coding upstream 1405 25043358 ~ 25046146 (+)
LOC117599307 NA coding upstream 34280 25011096 ~ 25013271 (+)
LOC113525303 LOC108275832 coding upstream 39734 24999945 ~ 25007817 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding upstream 165911 24870669 ~ 24881640 (+)
txk LOC108275609 coding upstream 178719 24856580 ~ 24868832 (+)
LOC117599273 ccdc171 coding downstream 16396 25069915 ~ 25072941 (+)
G260779 NA non-coding upstream 18590 24970399 ~ 25028961 (+)
G260736 NA non-coding upstream 24997 24864162 ~ 25022554 (+)
G260796 tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171 non-coding upstream 30612 25015220 ~ 25016939 (+)
G260759 NA non-coding upstream 63748 24936921 ~ 24983803 (+)
G260761 NA non-coding upstream 109530 24937479 ~ 24938021 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding downstream 1629 25055148 ~ 25060232 (+)
ddx58 ddx58 other upstream 411422 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 594013 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 778284 24268577 ~ 24269267 (+)
G260415 NA other upstream 1014827 24032227 ~ 24032724 (+)
G259993 NA other upstream 1658237 23387538 ~ 23389314 (+)

Expression


Co-expression Network