G260894


Basic Information

Item Value
gene id G260894
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24724222 ~ 24725377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309033
CGTTGTATGTGCTGTATACTGTGTAGTAcatgtgctgtgtgtttctgtgtttgttattGTGCATGGTTAATGTACGAAAATATTTACACTGTCAAAAAAACCCAGAGTAACATTATGACAAAATCAGAGTCAGATTCACAGGTATATAGAAAAATAGTTTATTCTTTTACATTATCATACAGCAGGCCAAATAAGCAATATTAAACTTTAACGAACATACAGTACTATTGCAAAAGATATtcacactgaaatttaaaaaaaatacagtacgtgtcaataaacataaacagtcCTTCAGTAATGTCAGTAAACTCATAACGACTGAGTCACAAAttcataaaacataaacatccttcataaaaataaattattttcttcttcttcaccatATAGAGTCTTTAAAGCActtaggtacacacacacacactctcagtctGTAAaatactgctgtgtgtgtgcgcttgagCTGTAACGTTCtgtcccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactcgtCTCGGGTCGTCTGCACTTTGGAGTACGAGTCGCAGGGCGTAGTAAGGCAGGAGGTGGGCAGAGTGAACGGCCAGCAGAACTTACAGGGCACCACGGAGCGAACGTTCCTCTCCAGGAAGTTAAAGAAGAACCTCCACCACACACGAGAGAGATAATTCTGAGGAGAATCTCGTAGAGActggaggagagacagagagagagagagagagagagaATGTCCGATTCGACTCAACTGACTCATCCACTGGTTGGTTCTTGGGTTTTCGGTTCTTTTAGTCAAACACGTGCCACACCGGTGACGTTCATCAAGGTGAAGTGGACTTGCAAACCGGTTCGCCTGATTCGTTAAAAAGAATCCAAAAGATGATTCGTTTACGTGTTGGACATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309033 True 931 lncRNA 0.41 3 24724222 24725377

Neighbor

gene id symbol gene type direction distance location
LOC113530848 NA coding downstream 18893 24702380 ~ 24705329 (-)
LOC113530806 LOC108275724,LOC105922125 coding downstream 78489 24638291 ~ 24645733 (-)
prelid1b LOC108275727,LOC108413730 coding downstream 126563 24592873 ~ 24597659 (-)
LOC113530539 plekhg1,LOC108275720 coding downstream 139659 24537485 ~ 24584563 (-)
tcp1 tcp1 coding downstream 188148 24528290 ~ 24536074 (-)
cfi cfi coding upstream 9237 24734614 ~ 24745225 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding upstream 20506 24745883 ~ 24765073 (-)
LOC113530888 LOC108275606,LOC107568964 coding upstream 45883 24771260 ~ 24774653 (-)
LOC117599302 NA coding upstream 49709 24775086 ~ 24782044 (-)
si:ch73-106g13.1 LOC108275824 coding upstream 103155 24828532 ~ 24836728 (-)
G260873 NA non-coding downstream 23179 24681825 ~ 24701043 (-)
G260871 NA non-coding downstream 25798 24697969 ~ 24698424 (-)
G260885 NA non-coding downstream 29976 24693335 ~ 24694246 (-)
G260858 NA non-coding downstream 106178 24616034 ~ 24618044 (-)
LOC117599219 NA non-coding downstream 123972 24599111 ~ 24600250 (-)
G260895 NA non-coding upstream 473 24725850 ~ 24728369 (-)
G260897 NA non-coding upstream 4915 24730292 ~ 24730543 (-)
G260921 NA non-coding upstream 118650 24844027 ~ 24864890 (-)
G260942 NA non-coding upstream 145337 24870714 ~ 24873747 (-)
G260962 NA non-coding upstream 249338 24974715 ~ 24975307 (-)
tent5ab LOC108275717 other downstream 215754 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 337967 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 407807 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 744527 23973365 ~ 23979695 (-)
G260310 NA other downstream 960059 23763674 ~ 23764163 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 62313 24787690 ~ 24795423 (-)
G260947 NA other upstream 155581 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 235644 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 258602 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 315414 25040791 ~ 25042595 (-)

Expression


Co-expression Network