G260895


Basic Information

Item Value
gene id G260895
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24725850 ~ 24728369 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309034
gtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtctgtagttttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttagtgtgtagtagtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtaggtgtttatttgtgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtgtagtagtgtttatttgtctgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtggtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttagtgtgtagtagtgtttatttgtgtagtgtttgtttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttagtgtgtagtagtgtttatttgtgtgtagtgttgtttgttagtgtgtagtagtgtttatttgtgtgtagtgttgtttgttggtgtgtagtagtgtttatttgtgtgtagtgttgtttgttg

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU309034 True 906 lncRNA 0.35 2 24725850 24728369

Neighbor

gene id symbol gene type direction distance location
LOC113530848 NA coding downstream 20521 24702380 ~ 24705329 (-)
LOC113530806 LOC108275724,LOC105922125 coding downstream 80117 24638291 ~ 24645733 (-)
prelid1b LOC108275727,LOC108413730 coding downstream 128191 24592873 ~ 24597659 (-)
LOC113530539 plekhg1,LOC108275720 coding downstream 141287 24537485 ~ 24584563 (-)
tcp1 tcp1 coding downstream 189776 24528290 ~ 24536074 (-)
cfi cfi coding upstream 6245 24734614 ~ 24745225 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding upstream 17514 24745883 ~ 24765073 (-)
LOC113530888 LOC108275606,LOC107568964 coding upstream 42891 24771260 ~ 24774653 (-)
LOC117599302 NA coding upstream 46717 24775086 ~ 24782044 (-)
si:ch73-106g13.1 LOC108275824 coding upstream 100163 24828532 ~ 24836728 (-)
G260894 NA non-coding downstream 473 24724222 ~ 24725377 (-)
G260873 NA non-coding downstream 24807 24681825 ~ 24701043 (-)
G260871 NA non-coding downstream 27426 24697969 ~ 24698424 (-)
G260885 NA non-coding downstream 31604 24693335 ~ 24694246 (-)
G260858 NA non-coding downstream 107806 24616034 ~ 24618044 (-)
G260897 NA non-coding upstream 1923 24730292 ~ 24730543 (-)
G260921 NA non-coding upstream 115658 24844027 ~ 24864890 (-)
G260942 NA non-coding upstream 142345 24870714 ~ 24873747 (-)
G260962 NA non-coding upstream 246346 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 315079 25043448 ~ 25046293 (-)
tent5ab LOC108275717 other downstream 217382 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 339595 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 409435 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 746155 23973365 ~ 23979695 (-)
G260310 NA other downstream 961687 23763674 ~ 23764163 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 59321 24787690 ~ 24795423 (-)
G260947 NA other upstream 152589 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 232652 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 255610 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 312422 25040791 ~ 25042595 (-)

Expression


Co-expression Network