G260926


Basic Information

Item Value
gene id G260926
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25043448 ~ 25046293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309081
caatatttcacacacacacacacacacacacacacacacactggagcgTAGATAAGAGTGTGAGTTTATTATAAAACTGTACTCTACACATGGCTGAAACACAAACCcgtacaaaaataaacacatcacaatCTCTGTGACTTATTGCTTAGGCTGGTCtcacgctaacacacacacacacacacacacacacgcacgcacacacactctgacacacacacatattctctgacacacgcacacacgttaAAACCCCCAAACCGCAGTGAAGTGATCCTGCATAGATGCAGCAgccgtgacacacacacacacacactctactcgtcatcctcatcttcctcctcgtcgtcttcttcctcatcttcatcttcatcctcctcatcatcatcatcatctgcatcAACCATAGCTTTCTTAGCGGAGCCTGTGGGTCGGCCAGGGCCTCGTTTAGGAGCTCCGCCCCCTGCCCCGCCCTTAGCGCGGTACGCAGCGATGTCctacaggaaacaggaagtagagacACGTCAACACGCTGccctgtgtgtgttgtgtgtgtgtgtgataaagactataatgtttataattaaaGTACTTTTCACTGTTTGAGGAGCTGAAGGTCAGAGCAGGAAAGTCATGATATTTACAGATATCTTAACGATACGCAACACGCATCGCATCATCACAGCTGATGAAGTTTTAACGCTTTAACGAGGCCAGAGCAGATAACGGCTGAGTTTTTTCTGGGGTAGTTGGTTTGTTataaacatgctgtttttatACCACTGGGATATCACCATTCTACACCAAGGTCTAAAATAAACCCAAAATATCTGCTCTGGTCTTGTTCAGGGGTTCAGTTTCTAAAATTTGTCATGATGTCATGATTTGTACGATGCTAAAGGTTAATTAATTTGATGTTACTCGCTCGCTGACGATCAGAAACACGTGAGGCGAGTGCGCGAGATGAACATTCACCTTCTCGTATTTCTGGCGCAGAGCGGCTGCTTTCTGCTCGTAGGGCGTGCGGTCTTTAGGGCTCTGTTTGGCCCACATCTCAGCCAGCTTCTTGGCGATGTCTCCGATGGACAGGCTGGGGTACTCGCCCTTCACCGTCGGCCTGTGCTCCGAGCAGAAGACGAAGAACGCTGACCTGGAAAAAGAGGACGAGACAGAGACGGGGTTCAGCTGTAGCGTGTCTAATAGTGAGAAACCTTCTTGGGGGGTTTAAATCAGGTCCGTAAGTAAGTACGCAAATTAAAGGACTTGTAGTCTGAGCTCTGTACTTCAcactgatatgcaaattagctcacGAATAAACATCCAAGACACACTATTCTGATCTGAACCAGGATGGGCACAgggaatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggtgatGGGATCACACGTACGGGGGGCGTTTGGGAGCGTTGGGgtccttcttcttcctctccttcttccCCATGCCTTTCGGAGGGATGTAGTTCTTCATCTCCCGATCGTAGCGGTCCTTATCGGCCTTCGCCAGGTCTTCAAACTTCTTCTTCTCAGTCGCAGCCAGagtctaaacacaaacacacacacagccatgttaCACCCAATTAACCACCTACTAACCACCACCCACTGCCGtgttccatacacacacacaccttccaccGCTCAGAGCAGGTCTTGGAGAACTTGGTGAAGTTCACCGTGGTACCAGGACTCTTCTTCTTGTGCTCTTCCCGACAGGAGAGAACGAAGAAGGCGTACGCTGAGGTCCGGCCTTTCGGCTTATTCACATCTTTCACCATGGctgcaacaaaaacaacacaaaaatattattaatttacactttatatatatatacacatgtatgcAGGGGACAAAACTAATTCCTGTAAAGTGTACTCTATAAAGTGTAGATGATATTATTCCTCAATCTCAGTAGTGCACTTGGTTTTACTGTgtggatttatttacagttaactTTAGATTTAAACTCgcgccattttttttttacctcagaaTTTTTactattatgtttttattaattgtataaCTATATATGTTTGTTTTACACCAAATAACGTCCACAAAGACGATTATTTTCTCGAACTGCTTAAATCTGAATTGTATTCGATGAGAAATCAGGTTCACTTCAGGAAAGCGGCCCGCTGTGGGGATCAGCGTCCGCTGCTTATGCTAAGCTAACCAGAACAATGGTGCCTCCATTTTCTTTCCCGCTTAATCCTACGCCATCGCGTCTTTCCCACTAGTCCAGACAAATCCCGCCTTCCTGCGCCATGATTGGCCAACTTATTACGAGCACGCaccactagccaatcacagcgcgGAAGGCGGGATCGTACCGACCAATCAGAGGACGGTAAACCAGATTTGTCGGGAAATGGCTGAGGAAAAATAACGCACTCCATTCTTTTCACTCTCCCTGTCCTTATCTGCGAGTTATCTCAAAACCTTAacgtgctttttaaaaaaaattatttcatataaaaaaaattaaacctaaATTCCTACTGTTATTGAGTGTgtacatttaatgtatttaacaaCTTTATAAACTTAAAAACTAAAAGCTAACGTTACACagctatttttttaacaaaagcgACAATAGTGACGATCTCTTTAAACACGgatattacacacacaattaaaccAAATCGTTATACCAAAATATATCAATTcctaaatgctttaaataaataaacagtaataacagtgttattaacagtgttattattacacacacacacatacctgctGCAGTCTCACTCCGTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309081 True 2798 lncRNA 0.44 2 25043448 25046293

Neighbor

gene id symbol gene type direction distance location
ctc1 NA coding downstream 1980 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 17358 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 61150 24977894 ~ 24982298 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 83430 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 114062 24921918 ~ 24929386 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 1327 25047620 ~ 25053567 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 10625 25056918 ~ 25067948 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 59415 25105708 ~ 25111538 (-)
G260962 NA non-coding downstream 68141 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 169701 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 178558 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 312905 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 315079 24725850 ~ 24728369 (-)
G260976 NA non-coding upstream 26418 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 42346 25088639 ~ 25089918 (-)
G260972 ctc1 other downstream 853 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 35255 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 66381 24961021 ~ 24977067 (-)
G260947 NA other downstream 160303 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 248025 24787690 ~ 24795423 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 30480 25076773 ~ 25079035 (-)

Expression


Co-expression Network