G260942


Basic Information

Item Value
gene id G260942
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24870714 ~ 24873747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309098
GTAAAAGAAACGTAGATATTTTTATACCGCGTAAAAAAACCATGTAGCTATTTTCATACTGCGTGTTGTCAGGAATCGTGTCttgtttgatgtttttatttttgcttttcctACGAATAGTTTAGGTTTCACACAATTTCTTATAAAagtgctaattattattattgcgtTCACGCTTCCTTCTCGACTCTCGCGCACTAACAGACGGATGATGAAGTGGATTCAGAATGTGCTGCGCGGGATGAACTCGTGTAGCTTCTCCTCGTctcacctgtgcaggtaatCGGGCGCTTTGTTCAGGAGTGTGTAGTACTGCCTGACGAACTCGCGCCCTACGAGCAAAGGGCTCGGTTTCTCCATCACCATCTCTTTCAGGTCACCTGGATGTGggatgctAAAAAAAAACGAGAAACGGCGCTCGCGCGGACGGCTGTGTGGTCACAGAAGCTCCGAGAAcacaaaataaactgtaaggggtgttttgtttttgatcaGAACTCGTTTTTACCGGAGACTGATTcggttttttaatgtttctgatataaacactgacacacacacagcgcttcGGCCGGCTCTTCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309098 True 585 lncRNA 0.45 2 24870714 24873747

Neighbor

gene id symbol gene type direction distance location
tec tec coding downstream 18847 24836832 ~ 24851867 (-)
si:ch73-106g13.1 LOC108275824 coding downstream 33986 24828532 ~ 24836728 (-)
LOC117599302 NA coding downstream 88670 24775086 ~ 24782044 (-)
LOC113530888 LOC108275606,LOC107568964 coding downstream 96061 24771260 ~ 24774653 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding downstream 105641 24745883 ~ 24765073 (-)
LOC113525311 LOC108414782,LOC103038743 coding upstream 14987 24888734 ~ 24898675 (-)
LOC117599306 LOC108275826 coding upstream 48171 24921918 ~ 24929386 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding upstream 58837 24932584 ~ 24960018 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding upstream 104147 24977894 ~ 24982298 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding upstream 141465 25015212 ~ 25026090 (-)
G260921 NA non-coding downstream 5824 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 140171 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 142345 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 145337 24724222 ~ 24725377 (-)
G260871 NA non-coding downstream 172290 24697969 ~ 24698424 (-)
G260962 NA non-coding upstream 100968 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 169701 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 198964 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 214892 25088639 ~ 25089918 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 75291 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 362246 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 484459 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 554299 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 891019 23973365 ~ 23979695 (-)
G260947 NA other upstream 7211 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 87274 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 110232 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 167044 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 203026 25076773 ~ 25079035 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G342746 NA unknown CI01000129 null 1836919 ~ 1837748 (-)
mexican tetra (Astyanax mexicanus) G284035 NA non-coding NW_019172568.1 APWO02002166.1 16040 ~ 18387 (+)