G260962


Basic Information

Item Value
gene id G260962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24974715 ~ 24975307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309120
CTCCatcaagtgcactacatagggtgtagggGCCATTTATATActccatctagtgcactacatagggtgtaggaGGCATTTATATActccatctagtgcactacatagggtgtagggGCCATTTATATActccatctagtgcactacatagggtgtaggaGGCATTTATATActccatctagtgcactacatagggtgtaggaGGCATTTATATActccatctagtgcactacatagggtgtaggAGCCATTTATATACTCCatcaagtgcactacatagggtgtaggaGGCATTTATATActccatctagtgcactacatagggtgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309120 True 330 lncRNA 0.43 2 24974715 24975307

Neighbor

gene id symbol gene type direction distance location
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 14697 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 45329 24921918 ~ 24929386 (-)
LOC113525311 LOC108414782,LOC103038743 coding downstream 76040 24888734 ~ 24898675 (-)
tec tec coding downstream 122848 24836832 ~ 24851867 (-)
si:ch73-106g13.1 LOC108275824 coding downstream 137987 24828532 ~ 24836728 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding upstream 2587 24977894 ~ 24982298 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding upstream 39905 25015212 ~ 25026090 (-)
ctc1 NA coding upstream 53488 25028795 ~ 25041468 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 72313 25047620 ~ 25053567 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 81611 25056918 ~ 25067948 (-)
G260942 NA non-coding downstream 100968 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 109825 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 244172 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 246346 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 249338 24724222 ~ 24725377 (-)
G260926 NA non-coding upstream 68141 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 97404 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 113332 25088639 ~ 25089918 (-)
G260947 NA other downstream 91570 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 179292 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 466247 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 588460 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 658300 24273737 ~ 24316415 (-)
si:ch211-149b19.4 LOC108275830 other upstream 8672 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 65484 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 101466 25076773 ~ 25079035 (-)

Expression


Co-expression Network