G260976


Basic Information

Item Value
gene id G260976
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25072711 ~ 25073088 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309137
gtgtgaggctcttacagtgtcagtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggctcttacagtgtcagtgtgtgttgtgtgttgtcaGCGCGCTCTCTCTCgcgtgtgtgtgctctctccaCTTCTCCAGATCTGTGTTTGAGCAGCTCCAGACTGGACGCAGCCTCAGCCTGATTCCTCTTCTCTACTGACAGAGCCGCTTCCACATCCCTGAGccgcagctacacacacacacacacacacacacacacacacacaatacagagTACAGAACTGTTACAGTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309137 True 297 lncRNA 0.53 2 25072711 25073088

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding downstream 4763 25056918 ~ 25067948 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding downstream 19144 25047620 ~ 25053567 (-)
ctc1 NA coding downstream 31243 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 46621 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 90413 24977894 ~ 24982298 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 32620 25105708 ~ 25111538 (-)
G260926 NA non-coding downstream 26418 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 97404 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 198964 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 207821 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 342168 24730292 ~ 24730543 (-)
G260979 NA non-coding upstream 15551 25088639 ~ 25089918 (-)
G260972 ctc1 other downstream 30116 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 64518 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 95644 24961021 ~ 24977067 (-)
G260947 NA other downstream 189566 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 277288 24787690 ~ 24795423 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 3685 25076773 ~ 25079035 (-)

Expression


Co-expression Network