LOC117599229 (if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409)


Basic Information

Item Value
gene id LOC117599229
gene name if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25076773 ~ 25079035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309138
gcatgcgcagtgacGCACTCCCACAGTCCATGGCGTTGTTAGCTGATTAGCATGTTGGGGTTTTTGTTAAGTGTGTTTTGAAGCATGTCTCCGGAGCTGAATGATTTTCTGTTTTAGACTCAGCGCATAAAATCTCGAGATATTATTCTACATTTAATGCCGGAAGTGTAACGGAAACAGAGCAGCGCGCGCGGACAGAATGAATCAGTTTGAGGAtttgaaagaggaagaagcagaagagaagaggaatgtGACCGACTCTGAGTCTgtgaataataacaataataacaggaGAAAGacagtaACCCCGGCTCCAGGTGAACATCCTCTGCAGTATAACTACACGTTCTGGTATTCGCGCCGGACCCCCAGCAGACCCGCAAACACACAGAGCTATGAACAGAACATCCGACAGATCGGCACCGTCGCCtcggtggaaCAGTTCTGGAAGTTCTACAGTCACCTGGTTCGTCCTGGAGATCTGACGGGTCACAGCGACTTCCACTTGTTCAAAGAGGGAATCAAGCCCATgtgggaggatgAAGCCAATAAGAACGGGGGGAAGTGGATTATCCGGCTGCGTAAGGGTTTGGCGTCGAGGTTCTGGGAGAACATTATCCTGGCGATGCTGGGGGAGCAGTTCATGGTGGGGGAGGAGGTGTGCGGCGTCGTCGTCTCCATACGCTTTCAGG
>XM_034311681.1
GGggttgcgcatgcgcagtgacGCACTCCCACAGTCCATGGCGTTGTTAGCTGATTAGCATGTTGGGGTTTTTGTTAAGTGTGTTTTGAAGCATGTCTCCGGAGCTGAATGATTTTCTGTTTTAGACTCAGCGCATAAAATCTCGAGATATTATTCTACATTTAATGCCGGAAGTGTAACGGAAACAGAGCAGCGCGCGCGGACAGAATGAATCAGTTTGAGGAtttgaaagaggaagaagcagaagagaagaggaatgtGACCGACTCTGAGTCTgtgaataataacaataataacaggaGAAAGacagtaACCCCGGCTCCAGGTGAACATCCTCTGCAGTATAACTACACGTTCTGGTATTCGCGCCGGACCCCCAGCAGACCCGCAAACACACAGAGCTATGAACAGAACATCCGACAGATCGGCACCGTCGCCtcggtggaaCAGTTCTGGAAGTTCTACAGTCACCTGGTTCGTCCTGGAGATCTGACGGGTCACAGCGACTTCCACTTGTTCAAAGAGGGAATCAAGCCCATgtgggaggatgAAGCCAATAAGAACGGGGGGAAGTGGATTATCCGGCTGCGTAAGGGTTTGGCGTCGAGGTTCTGGGAGAACATTATCCTGGCGATGCTGGGGGAGCAGTTCATGGTGGGGGAGGAGGTGTGCGGCGTCGTCGTCTCCATACGCTTTCAGGTCAGAGCTCCAGCGCTGCCTTCTCTTTATTAACACACAACCTCTTAT

Function

symbol description
eif4e2rs1 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 4F complex. Orthologous to human EIF4E2 (eukaryotic translation initiation factor 4E family member 2).

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309138 False 692 TUCP 0.51 5 25076820 25079027
XM_034311681.1 True 747 mRNA 0.50 5 25076773 25079035

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding downstream 8825 25056918 ~ 25067948 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding downstream 23206 25047620 ~ 25053567 (-)
ctc1 NA coding downstream 35305 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 50683 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 94475 24977894 ~ 24982298 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 26673 25105708 ~ 25111538 (-)
G260976 NA non-coding downstream 3685 25072711 ~ 25073088 (-)
G260926 NA non-coding downstream 30480 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 101466 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 203026 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 211883 24844027 ~ 24864890 (-)
G260979 NA non-coding upstream 9604 25088639 ~ 25089918 (-)
G260972 ctc1 other downstream 34178 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 68580 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 99706 24961021 ~ 24977067 (-)
G260947 NA other downstream 193628 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 281350 24787690 ~ 24795423 (-)

Expression


Co-expression Network