G260979


Basic Information

Item Value
gene id G260979
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25088639 ~ 25089918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309140
GAAAGCGTCGCttctctgtctcgctctttTACACCtcgtttatattttattgttctgagTTTTAAACTTTTGGTTCTGGAGATGAcggaaaagagaaaagagcgagCGCTTCCTGGAGCGTCTTTATAAAGcgtcttttcccacaggatttAACGCCATCTTTACCCACATGTGGGTTCAGACGGGATAAATATCACCTGCAGTTATTTCTCCTGCGCAGTTTATAGAAGAGAAAATACGGAGTCGCGTTTCCTGAGACGAGCACGAATTCTGATTAAAATCCCAGAGAAACTCCGGGAATAATTACATTCCACACCTCCGCAtggaaaactaatcccgtctgaaCAGGGTTAAGGGTTTTTCATCCTGGAACAGCTCCTCACTGATCCGTCTCTGTAACTCTGTAACTACGAGGTTCCTGTAACAGTATTGGCTGAACAGCTGAGAGGTGAGACATCAGGAGCGCAGACGCATGCAGTGGAGTGCAGAGGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309140 True 496 lncRNA 0.45 3 25088639 25089918

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding downstream 20691 25056918 ~ 25067948 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding downstream 35072 25047620 ~ 25053567 (-)
ctc1 NA coding downstream 47171 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 62549 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 106341 24977894 ~ 24982298 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 15790 25105708 ~ 25111538 (-)
G260976 NA non-coding downstream 15551 25072711 ~ 25073088 (-)
G260926 NA non-coding downstream 42346 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 113332 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 214892 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 223749 24844027 ~ 24864890 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other downstream 9604 25076773 ~ 25079035 (-)
G260972 ctc1 other downstream 46044 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 80446 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 111572 24961021 ~ 24977067 (-)
G260947 NA other downstream 205494 24880958 ~ 24883145 (-)

Expression


Co-expression Network