LOC113525303 (LOC108275832)


Basic Information

Item Value
gene id LOC113525303
gene name LOC108275832
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24999945 ~ 25007817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911786.2
TTACAGGTGCACAGGTAAACCTCCATCACTCTGGCTGGCTGAGGAacgagagacactgagagacagagagagagagagagggagagcgagaggACAGATCTGTCACCATGATGGAGGTCGTGCTGTTGTGCCTCTTTGGCTCCCTCACTGCTCTTCCTGTTCCCCGGGTGGAGGAGATGCAGTCAggaaGTGGGGATTTTATAGTCACCGGAGCAGCTGATTCAGTCCCAGCGGTGAGTTCCTCACCGAGCAGCACTCTGCTCCCTCTCCCTCAGTCCTTCTGGCGTTCTCCCGGGAGAACCCACACTCAGCTCCAGGCTCCTGAGGAGAACTTCATTCCTGTATCTGAGCAGCGTCTGGAGGTCACGACCCCGAACCCCACTGCATCTAAAGTGGGAGCCAAAACCCTGAGTGGTGCTCTGACCCTCCCTACTGAGGTTCCCAATGGTCCAAGTGTTACAGAGTCCACGGAGCCGAATCACACCGGAACCCCACCGCCCTCGACTCTGACTGCTCCACCCAGTGAACTGAACTACAGTCCTGTAAACACCAGCCTCGacacctcacttcctgtctcaggTCTGAGGGGAATGGATTTGAAGCGTGCTCACATCAGACCTCGGAGCGCTGAGAACGCAGAGGACAATGAGAACGCAGAGAACACAAGGAACGATGGCGAGAACAAGCGCAACACTGTGACCTCTGGCAAAGGgaagaaaaatacagtaaagggaggaacaaaagaaacaaaagcagcagcaaagggaggaaagaaagaaacaggaaatggaCAGAATGCGAAAACAGAGAAGGTCCAAAGTGCAGATTTTAGCTTTGAGTTTGATGGTTTTGGATGGCTAGGTGATGACCCTGGCCACACCCAAACAACACAAGGACCAAACAGCCCCGGTGACTCAAGCTCAAGCTCCAGTTCAAGCTCCAGTTCAAGCTCCAGCTCAAGCCCAAGTTCAAGCTCCAGCTCAAGCCCAAGTTcaagctccagctccagctcaaGCTCAAGCTCAAGCTCAAGTTCATCAAGTGAATCAAAAGACTCTAGTAGCTCCAAGTGAATCAAGTGATTCAAGTGACTCAAGCAATTCAAGTGACTCAAGTGATTCAAGTGATTCAAGCGACTCAAGTAAATCTTGTGATTCGAGCAAGTCCAGTAGTTCAAGTGACTCAAGTGACTCAAGTGATTCAAGTGACTCTTGCAATTCAAGCGACTCCAGTGATTCAAGTGATTCGAGTGACTCCAGTGATTCAAGTGATTCGAGCAGCTCAAGCAGCTCGAGTGAATCAAAGGAAATGCCTGTAGTTCATCACAGTTCATCCAACTCCAGTGAATGAATCAGAAAAACAATCAGTTCTACTTAATCAGAATCAGTTCTCATTTCCTCTCGAGTTTCCACGATGTTACACGCTAGTGGTAGCTAACAGATCATACAGCTAATTAGTTtatctaatcttttttttcttcaaattacttttctttttg
>XM_034311594.1
catttttctgggcTGTAATTCAGCTCACGgccagcagagggctctaaacaTTACACTCTTTAAATGTAAACCATTTATGCAAAAACTGGAGGCTATAATATTCCCTCACTTGTTAGCTACATGAAGTGCAAAACTAAACAAGCAAACCTCAGACATCTGTGGTGATGGAGACATTGTGTAACACGACattgtgtcttattaacttaaagagagagaataaagagaggctggtgagggaacgagtgtttatagctgctataacGTGCACAGGTAAACCTCCATCACTCTGGCTGGCTGAGGAacgagagacactgagagacagagagagagagagagggagagcgagaggACAGATCTGTCACCATGATGGAGGTCGTGCTGTTGTGCCTCTTTGGCTCCCTCACTGCTCTTCCTGTTCCCCGGGTGGAGGAGATGCAGTCAggaaGTGGGGATTTTATAGTCACCGGAGCAGCTGATTCAGTCCCAGCGGTGAGTTCCTCACCGAGCAGCACTCTGCTCCCTCTCCCTCAGTCCTTCTGGCGTTCTCCCGGGAGAACCCACACTCAGCTCCAGGCTCCTGAGGAGAACTTCATTCCTGTATCTGAGCAGCGTCTGGAGGTCACGACCCCGAACCCCACTGCATCTAAAGTGGGAGCCAAAACCCTGAGTGGTGCTCTGACCCTCCCTACTGAGGTTCCCAATGGTCCAAGTGTTACAGAGTCCACGGAGCCGAATCACACCGGAACCCCACCGCCCTCGACTCTGACTGCTCCACCCAGTGAACTGAACTACAGTCCTGTAAACACCAGCCTCGacacctcacttcctgtctcaggTCTGAGGGGAATGGATTTGAAGCGTGCTCACATCAGACCTCGGAGCGCTGAGAACGCAGAGGACAATGAGAACGCAGAGAACACAAGGAACGATGGCGAGAACAAGCGCAACACTGTGACCTCTGGCAAAGGgaagaaaaatacagtaaagggaggaacaaaagaaacaaaagcagcagcaaagggaggaaagaaagaaacaggaaatggaCAGAATGCGAAAACAGAGAAGGTCCAAAGTGCAGATTTTAGCTTTGAGTTTGATGGTTTTGGATGGCTAGGTGATGACCCTGGCCACACCCAAACAACACAAGGACCAAACAGCCCCGGTGACTCAAGCTCAAGCTCCAGTTCAAGCTCCAGTTCAAGCTCCAGCTCAAGCCCAAGTTCAAGCTCCAGCTCAAGCCCAAGTTcaagctccagctccagctcaaGCTCAAGCTCAAGCTCAAGTTCATCAAGTGAATCAAAAGACTCTAGTAGCTCCAAGTGAATCAAGTGATTCAAGTGACTCAAGCAATTCAAGTGACTCAAGTGATTCAAGTGATTCAAGCGACTCAAGTAAATCTTGTGATTCGAGCAAGTCCAGTAGTTCAAGTGACTCAAGTGACTCAAGTGATTCAAGTGACTCTTGCAATTCAAGCGACTCCAGTGATTCAAGTGATTCGAGTGACTCCAGTGATTCAAGTGATTCGAGCAGCTCAAGCAGCTCGAGTGAATCAAAGGAAATGCCTGTAGTTCATCACAGTTCATCCAACTCCAGTGAATGAATCAGAAAAACAATCAGTTCTACTTAATCAGAATCAGTTCTCATTTCCTCTCGAGTTTCCACGATGTTACACGCTAGTGGTAGCTAACAGATCATACAGCTAATTAGTTtatctaatcttttttttcttcaaattacttttctttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911786.2 False 1498 mRNA 0.49 5 25002010 25007817
XM_034311594.1 True 1754 mRNA 0.48 6 24999945 25007817

Neighbor

gene id symbol gene type direction distance location
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding upstream 118305 24870669 ~ 24881640 (+)
txk LOC108275609 coding upstream 131113 24856580 ~ 24868832 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding upstream 173262 24807517 ~ 24826683 (+)
LOC117599305 NA coding upstream 195532 24803171 ~ 24804413 (+)
LOC117599304 LOC108275642 coding upstream 197416 24801892 ~ 24802529 (+)
LOC117599307 NA coding downstream 3279 25011096 ~ 25013271 (+)
hmgb2b LOC108276448 coding downstream 35541 25043358 ~ 25046146 (+)
LOC117599273 ccdc171 coding downstream 62098 25069915 ~ 25072941 (+)
G260759 NA non-coding upstream 16142 24936921 ~ 24983803 (+)
G260761 NA non-coding upstream 61924 24937479 ~ 24938021 (+)
G260737 NA non-coding upstream 65004 24919021 ~ 24934941 (+)
G260751 NA non-coding upstream 75391 24914254 ~ 24924554 (+)
G260748 NA non-coding upstream 89482 24909719 ~ 24910463 (+)
G260796 tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171 non-coding downstream 7403 25015220 ~ 25016939 (+)
G260812 anp32b,LOC108275503,LOC108412630 non-coding downstream 39734 25047551 ~ 25053519 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding downstream 47331 25055148 ~ 25060232 (+)
ddx58 ddx58 other upstream 363816 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 546407 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 730678 24268577 ~ 24269267 (+)
G260415 NA other upstream 967221 24032227 ~ 24032724 (+)
G259993 NA other upstream 1610631 23387538 ~ 23389314 (+)

Expression


Co-expression Network