cnga1b (cnga1,LOC107748929,LOC107731257,LOC107567610)


Basic Information

Item Value
gene id cnga1b
gene name cnga1,LOC107748929,LOC107731257,LOC107567610
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24977894 ~ 24982298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911789.2
cTTCATGTCCACTCTGATGTACCTGTATGGATGTGTACCTGTGATGGAGGACATGCACACAGGTGTGTAGCGGGCAGTGGATTAAGCTAGCGTCAGgtggctcagccaatcagctgcCATGTCGAATAGCGTGAAGCCACTTGTTCCTCCCATAATCCTCCTGGAGGGGGTGGAGGAGGTTATCGTGGGCGACGCAGAGGACTTGACGAAGAGGCAGCGCTCTGGTGCTGGTGCACTTTtcaacatcaacaacagcaacaacaatgaggaagaggagaagaaagagaaaaagaagaaagaaaagaaagaaaagaaggggaaaaaagagaaaaaagaaaagaaagaaaagaaggaaaagaaggagaagaaggacaAAGAgcaagaggagaaagaaaaggagaaggagaaggagaaagagaaagccaAGAAAGAGGAGCCGACGGAGATTTACGTCATCGATCCTGCAGGAAACATGTACTACAACTGGCTCTTCGTCATCACGTGTCCTGTCATGTATAACTGGGTTCTGATCATCGCCAGAGCCTGTTTTGAGGAGTTGCAGCACGATTATTTGATATACTGGTTCATCACAGATTTTCTGGCAGACCTGGTGTACCTGGCAGACATGGTCTTCAGGACAAGAACAGGGTATCTGGAGCAGGGTCTGCTGGTTAAAGACGAAAAAAAGCTCCGAGCACGATACATAGAGAGTATCCAGTTCAAGCTGGACCTCATCTCCATGATTCCCACAGACATTTGTTACCTTTTTGTTGGTATCAACTACCCCGAGATCCGTATGAACAAGCTCTTCCGGGTCAACCGCCTCTTTGAGTTTTTCCAGCGCACAGAAACAAGGACCAACTTTCCCAACGTCTTCCGAATCTCCAACCTTGTCATGtacatcgtcatcatcatccacTGGAACGCTTGCCTCTACTACTCATTCTCCAAAGCTATTGGTTTTGGCGCTGATAGATTCGTCTATCCGGATACTACGGACCCAGAATTTGGCCGTTTGGTGAGGAAATATGCGTACAGCATGTACTGGTCCACTTTGACCTTGACCACCATTGGTGAAACTCCGCCTCCTGAGAAGGATTCTGAGTACTTCTTTGTGGTTACAGACTTCCTAGTGGGAGTTTTGATCTTTGCTACAATCGTTGGTAATGTCGGTTCCATGATCACAAACATGAATGCAGCACGAGCAGATTTTCAAGCCCGAATTGACGCCATCAAGCAGTACATGAGTTTTCGTAATGTGACCAAGGATCTGGAGAAACGCGTCATCAAATGGTTTGATTACCTTTGGACCAATAAGAAGGCTGTAGATGAGAGGGAAGTGCTCAAGTACCTTCCAGACAAGTTAAGAGCAGAAATCGCCATCAATGTGCACCTGGACACTCTTAAGAAAGTGAGAATCTTTGCAGATTGTGAGGCAGGACTTTTGGTTGAACTTGTGCTGAAGCTCCAGCCGCAGGTTTACAGTCCAGGTGATTATATTTGCAAAAAAGGCGATATTGGCCGTGAGATGTACATCATCAAAGAAGGAAAGCTTGCTGTGGTGGCTGACGATGGCATTACACAATTTGTTGTTCTCAGCGATGGAAGCTACTTTGGTGAGATCAGCATCCTCAATATCAAGGGCAGCAAAGCTGGAAACCGAAGAACGGCCAACATACGCAGCATCGGATACTCTGATTTGTTCTGCCTTTCCAAGGACGACTTGATGGAGGCTCTGACCGAGTATCCAGATGCAAAGGCTATGCTGGAGGAAAAGGGACGCCAGATCCTCATGAAGGACAACCTGCTGGATCTTGAGATGGCAAAACAGGGACCAGACCCCAAGGACATGGAAGAAAAAGTGATAAAGATTGGAACGGTATTGGACGACATGCAAACGCGTTTCGCCCGTTTACTCGCTCAACATGAGGCCACGCAGAGCCGCCTGAAGAGACGTGTCACCAGACTGGAGAGCAAAGTCATCACCTCCACCAGCGTCACCTTCACCGAGATGACTGAGACAGAGCCGGGGGTTCTGCCTCCTCCTCCCGAGAAATCAGAGGAGAAGAAAGACGAGAAGTAAAACAGTGATGGGAAAGAGAACTGACTCTGTGGATTTCTAAGCAGTGAGCGAGGGGATTAAAGAGGAATGgacattataaaaaatatgcagAGTATGAATAAGAGGTTTAAAGGAGGTTTTATCTGACGCACGTTAAAACACGGCTTTTATTCCATGTGAACAAAGATTCCTAGAACCCTGAGAACAATCCTGTGAAATTATTCACCATTTAGTGTTTTATTGCCATTTTGAACATCACGTGGCTTTAATTAGACAAACAGATAAAACCCAAAATT

Function

symbol description
cnga1 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to be involved in cation transmembrane transport and visual perception. Predicted to be located in membrane and photoreceptor outer segment. Implicated in retinitis pigmentosa and retinitis pigmentosa 49.

NR:

description
LOW QUALITY PROTEIN: cGMP-gated cation channel alpha-1

GO: NA

KEGG:

id description
K04948 CNGA1; cyclic nucleotide gated channel alpha 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911789.2 True 2358 mRNA 0.46 9 24977894 24982298

Neighbor

gene id symbol gene type direction distance location
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 17876 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 48508 24921918 ~ 24929386 (-)
LOC113525311 LOC108414782,LOC103038743 coding downstream 79219 24888734 ~ 24898675 (-)
tec tec coding downstream 126027 24836832 ~ 24851867 (-)
si:ch73-106g13.1 LOC108275824 coding downstream 141166 24828532 ~ 24836728 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding upstream 32914 25015212 ~ 25026090 (-)
ctc1 NA coding upstream 46497 25028795 ~ 25041468 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 65322 25047620 ~ 25053567 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 74620 25056918 ~ 25067948 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 123410 25105708 ~ 25111538 (-)
G260962 NA non-coding downstream 2587 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 104147 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 113004 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 247351 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 249525 24725850 ~ 24728369 (-)
G260926 NA non-coding upstream 61150 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 90413 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 106341 25088639 ~ 25089918 (-)
nfxl1 nfxl1 other downstream 827 24961021 ~ 24977067 (-)
G260947 NA other downstream 94749 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 182471 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 469426 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 591639 24374273 ~ 24386255 (-)
si:ch211-149b19.4 LOC108275830 other upstream 1681 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 58493 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 94475 25076773 ~ 25079035 (-)

Expression


Co-expression Network