si:ch73-106g13.1 (LOC108275824)


Basic Information

Item Value
gene id si:ch73-106g13.1
gene name LOC108275824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24828532 ~ 24836728 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911800.2
tcctGTTGCAGTGGCTCGTCTCTCAGATGTTCGAAGGCGTGACTGCAGGCTTCATGACCGTCTTtaagatgtCGTGGCAGCCTCCATACCATGGCTCAAAGTTCCGTCACGTTTACGGAAAACCAGCGAGTAAGGGCCAGAATTACGATGGTCTGCCAATCACTCGCGGTGTCCATGACAACCACTGCTGTGCCGTCAATCCGTGCTTCATGGCGGTGGTCACTGAGTGCGCTGGGGGCGGAGCCTTCATCGTCATCTCCATACGTGACaaagGCCGTGTGGACCCTCATCACCCCCGTGTGTGTGGTCACAGCGCCCGGGTTCTGGATGTTAAGTGGGATCCATTTGATGACCAGCGTATAGCTTCCTGTTCTGAAGACTGCACGgttAAAGTGTGGCAGATTCCCAGTAATGGATTGAAGGAAAATCTGATCAGACCACAGAAGGAGTTGTTAGGCCACGTCCGGAGGGTGGGGCTTATCGAGTGGCATCCAACCGCGAAGGACATTTTGTTAAGCTCCGCCTACGATTATCGAgtgtgtgtgtggcgtgtggaCCATGTGGGCGTGGCGGTGGTGAAAACGCCGGTGtgtgtgatacacacacacactgacctggtGACGAGTGTGAGCTTCAGCGAGGATGGCAGCAGAATCGCTACAACATGCAGAGACAGAAGACTCCGAGTCCTCGAGCTGCGCACAGGACACACACTTCAGgagtcATGTAATGAGTCTCATAAGGCCTTCAAGGTTCTGTTTCTGTCCAACCGGAACCTGCTGCTCACAACTGGAACCTCCAAGTGGAACCAGAGACAGTTCGCACTGTGGGACccggatGATTTATCTGAGCCGTTGTTGGAGGAGGATGTAGATGGAGGTTCTGGAGTTCTCTTTCCATTTTATgatcctgacacacacatgctgtaccTGGCTGGCAAgggaGATGGTAATATTCGGTACTATGAGGTGAGTGCGGAGAAACCGTATATACACTTCCTGGCAGAATATCGTTCTCCACTACCACACAAGGGCCTGgGTGTGATGCCGAAGCGAGGGTTAGACACAGCGCAGTGTGAAGTGTTTCGCTTTTATCGCCTCGTTACGGTTAAAGACCTCGTGGAACCGTTATCCTTTATCGTACCACGAAAGTCTGAGGACTTTCAGGAGGACATTTATCCGATGACGGCGAGCAACGAGGCGGCCATGACGGCTCAGGAGTGGCTCATGGGGCAAAACAAGGGCCCAGTGCTGATGTCTCTGAGGCCTGTGAGCAAGGTGCAGAACCCGTACCCAGCTCCAGAGCAGGACGCTCAGCTTGGGCGCTCAGCCTGCAGCCTGGACAGCCTCCTGGTGAACTACGGAGCAGAGAAACCGGCCAATCAGAAAGCAGGGTATGAGATCAGTGACCTATCAGAATGGCAGGAGGATGAGACTCAGTGGAACAGCTGGAGAGACACACACTGTGGGGTTCGGTGGTGCGAGTCAGCAGGATACACACCACCGGCCGCAGAGAAGGAGCTGCTGAATGTGTTTTATAAGCAGCAGGAAGAGATCAGATCTCTGAGGCAGCAGCTCCGTCAGCGGGACAGCAGGATTCAGCAGCTGGAGCTCGAGATCAAGAACATACGCAATCAGCTGAGAGCCTCGTTCTGATCCGGCTGATTAAAGCACACGGAGAAGCCATGCACCGGagactgactcactgaacagAGAATCATATGACCATGTGATTCACTGCGAGTCAGAAAGAAATGAGGAAGTGTACAGATAACCAGAGCTGTTCTAGTAAAGCCTGCCCACTCGCCGGCCATCTCAGAAGGTTCCTGGTGGTTATTTTTACACGAGATAATGACGTGTCACAGTCGAATTAACTTGCATATATGAGCTGTTCGATATTTTAACTCATTTTTTAATACACTAACAGCTTAATTTACAGCATCAGCATATCTCTCTAtccaaaacataaacacacttttgACACAGTTGAGAAAAGTTTATTTCATAAAACATCACTATAAACATCATCAGGTGACAAACATCCACTGATTTGTCTGGActaataagtaaaaaattttATCaaaagtacagtacagtgatttTCTGACATCACAAATCtactgactgacacacacacgtctaatCTGGCATGACTCTAAATGAGTAAATCTGATCTTAATGTACGGTATTGCTTTTAAAGGTTTGTTCATTACACACAAACGCAACACAAAGGTTTGTGCAAAGCTGCTGCTCATAAATCCACACTGAAAacctttacatttaattaatcatGCGATTGACTGAAGTTCAACAATATCGTCATTGTTGTTATCTCCATGTTTGGTGGTCATTTGATATCTGCTACATTGATGATGTTCTGATGAACTACTGAAGACTGATTCCTCTAACAAacccatttatatttatttttaaattttcaaatttCTCCTGAGTGCAAATCTGTAAACAAAATCATTCTGGTCAAACAGAACCAAATCATCTTACTGCACATTGTTCAAGTCCTTGGTTCAAAAGAGCTGTTGTTCTTGTGAATTTCATctgaattacatttaatttatgaaaGTTGTTGGggttgaaatataaaaatttggTGCCACTTGATTGACAGGAAGTCAACATACACAGCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911800.2 True 2651 mRNA 0.47 12 24828532 24836728

Neighbor

gene id symbol gene type direction distance location
LOC117599302 NA coding downstream 46488 24775086 ~ 24782044 (-)
LOC113530888 LOC108275606,LOC107568964 coding downstream 53879 24771260 ~ 24774653 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding downstream 63459 24745883 ~ 24765073 (-)
cfi cfi coding downstream 83307 24734614 ~ 24745225 (-)
LOC113530848 NA coding downstream 123203 24702380 ~ 24705329 (-)
tec tec coding upstream 104 24836832 ~ 24851867 (-)
LOC113525311 LOC108414782,LOC103038743 coding upstream 52006 24888734 ~ 24898675 (-)
LOC117599306 LOC108275826 coding upstream 85190 24921918 ~ 24929386 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding upstream 95856 24932584 ~ 24960018 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding upstream 141166 24977894 ~ 24982298 (-)
G260897 NA non-coding downstream 97989 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 100163 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 103155 24724222 ~ 24725377 (-)
G260871 NA non-coding downstream 130108 24697969 ~ 24698424 (-)
G260885 NA non-coding downstream 134286 24693335 ~ 24694246 (-)
G260921 NA non-coding upstream 7299 24844027 ~ 24864890 (-)
G260942 NA non-coding upstream 33986 24870714 ~ 24873747 (-)
G260962 NA non-coding upstream 137987 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 206720 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 235983 25072711 ~ 25073088 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 33109 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 320064 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 442277 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 512117 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 848837 23973365 ~ 23979695 (-)
G260947 NA other upstream 44230 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 124293 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 147251 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 204063 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 240045 25076773 ~ 25079035 (-)

Expression


Co-expression Network