irx7 (LOC108275649,LOC107751843)


Basic Information

Item Value
gene id irx7
gene name LOC108275649,LOC107751843
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18500181 ~ 18501811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920075.2
CTTTTGGAGTACAACTGTCAGTCATGTCACTTGACCCCGCCCCTCGCTGCAGCTCCATCTATAAAGAGAGCCGGTGCGCTCAGAGAGTGATCACTCGAACTTTGATGCTCAGGTTTTAAGGATGCCTGCTTCTCCAAGCGGATTTGGTCACTACTTTGTGGACAGGAACGTCTCCATGCCTGCTGGATATCAGATGCTGGGCTGTGCGCCGGGGGTACAGCAGCCTCCTCCTCATCTGGCTGCCATGGCCGGGATGCCTCTGCCTTTTTCAGGAATACCGGGATACACTTTCATTCCGTTCCCACATCCTGGACACATGGCACACATGGGGAGCTCATACGACCTGAAAGCCGCCTCACCTTATCACCAGGCTGTGCTGAGCCGCGGCGGTGCGTATTTCTCTCCCTACAGACCGGTGGTCGCGGATGAGCCAGGACGCGTGGCCAAAGTGGCGAGCAGAGAAAGCACTGGCGCGCTGAAAGCCTGGCTCAGCGAGCACCTGAAGAACCCGTATCCCACCAAGGGCGAGAAGATCATGCTGGCCATCGTCACCAAGATGAGCCTGACGCAAGTGTCCACCTGGTTCGCCAACGCGCGCCGCCGCCTCAAGAAGGAGAACCGCGTCAGCTGGGCGTCCAAAGCCAAAAgcgatgaggaggaggaggctgaTGAGAGCgaggcagaagaagaagaagaagatgatgatggctCTTCGCAGAAAGATCGATGCTCAGACGATGAGGCTGACATCGATCCTCAGATCGTTGATGTTGAGGAGGAGTTGAGCGCAGTGGAGAGCGAGGCCCTGCGCCCGGCTCAGGAGCGCCTAACGGAACGACTCGAACAGCCTAACGAGGGTGACACTTCCGGCTCCGTAGCCGTTACTACCGGAAACAGCGAGGCTGGGTGTGAATCGGCGAGTAAGGAGTGTAAAGAAagtgctaatggacagaaaccGAAAATCTGGTCTCTAGCAGAGACAGCCACTTCCGAAACTCCGGTGAAGAAGAGCAATGAGCATTGCCAAGATTTTAGCAAATGGTGGGCAAACTGGGCGTCCAGGAGCAGCTACTTACCTGCAAACTACTCTGCACACTTTCTCCCACAGAGTCAGTTAAACTGTTAATGCAACTCATGCAAGGCAGATGTTTGCACTTTGGAACTGTTCTGATAAGAGctgaactttttttatttttattttttggttattCTTATCCTGGACCCTTTAGTCATGAAGTTTACAGTCAGGTTTACATGCCTGGTTTAACACCAAATGAGCTTGAGATTGTTGTAAATAATTGTaaagtttattttgttgtaCACATTGTAAATTATAAATGCCTTTACATGCCtatgattaattatttttgctaaaataaaacatttgaaaatgaaaa

Function

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-1-like

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920075.2 True 1397 mRNA 0.51 2 18500181 18501811

Neighbor

gene id symbol gene type direction distance location
LOC113530281 LOC108275500,LOC106567306 coding downstream 22382 18440875 ~ 18477799 (-)
cbln4 cbln4,LOC106567122 coding downstream 65195 18425365 ~ 18434986 (-)
bcas1 bcas1 coding downstream 160528 18308254 ~ 18339653 (-)
zfp64 zfp64 coding downstream 414889 18075318 ~ 18085292 (-)
sall4 sall4,LOC107735783 coding downstream 460377 18032456 ~ 18039804 (-)
plekhg5b plekhg5 coding upstream 38452 18540263 ~ 18565527 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding upstream 63713 18565524 ~ 18607418 (-)
avpr2aa avpr2,LOC108275493 coding upstream 155284 18657095 ~ 18675212 (-)
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding upstream 191596 18693407 ~ 18703924 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 617220 19119031 ~ 19127613 (-)
G256929 NA non-coding downstream 150489 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 709274 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 766132 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 767718 17732097 ~ 17732463 (-)
G256613 NA non-coding downstream 778248 17721723 ~ 17721933 (-)
G257322 NA non-coding upstream 151282 18653093 ~ 18653315 (-)
LOC113530357 NA non-coding upstream 307252 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 433086 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 437671 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 616038 19117849 ~ 19119020 (-)
znf217 znf217 other downstream 199494 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 586904 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 1629017 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1661532 16787801 ~ 16838649 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 1805150 16647823 ~ 16695031 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 7337 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 434766 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 868876 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 929639 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 981282 19483093 ~ 19621613 (-)

Expression


Co-expression Network