cd40


Basic Information

Item Value
gene id cd40
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18490481 ~ 18497402 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920076.2
AGCCCTTAAGGGGAGTATCCAGAAACagaactgaaacacacagaaagggGTTTGCTTCATAACCGCTCGGCTTCTCTTCACAGTAGCTTTGGCTGATTTCAGTCCACATTAATGGCACAAACGCTTAGAGCAAAGATGCATGTTCGAAGCGTCTTCATTCTTTTGgttttgtcTGTTGTTGCTGAGTCCTGTGATGAAGAAACGCATTACGTGAAGGATAATAAGTGCTGCAAGAAGTGTGAACCAGGTACAAGGATGTTACAAAACACGGACTGTGAAGATCCAGTCTGTCAGGAGTGTCCGGACGGGGAATATCAGGATGGTTACACGTTTGCTTTTCGATGCAATCTCCAGCCATACTGCGACCCCAACCTCAATTTGCGggcacaaacacaaagcaagACAGAACTCAGTTCATGTGTGTGCAAGCCTGACCATCACTGCACCAGCATGAATTGTGGTTCGTGTGTGAGAAACACAGTATGCAAAGCAGGCGAGAAAGTCAGGAAAATTGGCACCCGAACAACAGACACAGAGTGTGAACGCTGTCCTAATGGGACGTTTTCCGACCGTGAGTCAGCTTCAACCTGCAAGCCTTGGACAGAGTGTTCGTCAGGATCCAAAGAGGTTGTTCCAGGCTCTCATACATCTGACAGAATTTGTGAGGTGCAGAGTCAGAAGCTTGCCATAGTCATACCTGTGGTTGTTACTGGGCTGCTCTTTGTTTTGGGAGGTTTAGGCTACATGTTGTATCGAAAAGGCAAAACAGGATCTATATCCTTCGTGCAAAAGACATGTAGATTTTTGGGCATCAGAAATACTCATCAACCTCCTCAAGACAACGTGGACATAGAAACTGCACAGCCTGCCAATCTGCCACAGGAGGACACTGAGGATCTTTTAAAACTCGATGGTTCCTTAAGCCCAGGCATCTCTGAAAATGGAATGCCTGTCATTCAAGATAACAGTAAATCCTCACTTCTTTCTGAGACTGAAACAGAGCCAGAAAGGTTTTCAGTCcatttgtaataaatttatGCAGTAATACATGTTGGAAATTTGTCATCAAACTTCTCATGCATTAGTATAGTTAGCAAATGCTGGTAGAAATGAAATGGTTGCCAACTGCTCTTGACATGTaaagaataatatataatgtgatGTAGCGTGCAGCAACTTGTAACACACATTTGCGAACAGCTTGAAATTTCCACTTGAGTCTGTATTGTAATATATCCAGTTACAATGACCTTAGGGAGCGATAGCATGATGCTGTGATCATCTGGCAACTCCTGAGGTGATGGAATAAGATCGAACGAGTTATAATGAAACTGACAGATATGGGTCAGACTTGCACTActatgttttttgtatttttttattacttttcaaCATTGGTGTAAATATCCCTGTTATTGTGCcagttttgtttgtatttgaattttgatattttaaaagtgGAAGTGTCAATGATAATGTAACATTGATTTCTAGCATTCTAATTCCTGTACATATACTTTTAAagtgtatttgtttaaatcatGAGTTTTGTGTGGATGTGTTTTCTCGTACAATGGGACAACATTTGGGAGCGTGCCCAGTGTGTGCTTGGGGCAGactattgtgtattattatgtgaaATGTCCACATGAGAGCGCTGTTCAAAATCACAGGTTATGTGCAAATCTACATGCTGTGATAATAAATATGCTGTGTTTATAA

Function

NR:

description
TNF receptor superfamily member 5A precursor

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920076.2 True 1722 mRNA 0.41 9 18490481 18497402

Neighbor

gene id symbol gene type direction distance location
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding upstream 139008 18346775 ~ 18351473 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding upstream 249569 18193197 ~ 18240912 (+)
si:ch211-66i15.4 NA coding upstream 743952 17739271 ~ 17746529 (+)
si:dkey-261h17.1 NA coding upstream 814177 17649314 ~ 17676304 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding upstream 863423 17427302 ~ 17627058 (+)
casp9 casp9 coding downstream 113751 18611153 ~ 18620055 (+)
arhgap4a LOC108276165 coding downstream 126069 18623471 ~ 18644765 (+)
LOC113530736 ssr4,ssrd,LOC108275523,LOC108425558,LOC106567025 coding downstream 149306 18646708 ~ 18651829 (+)
fam3a fam3a,LOC102798212,LOC106567024 coding downstream 206050 18703452 ~ 18721160 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding downstream 227875 18725277 ~ 18779657 (+)
G256899 bcas1 non-coding upstream 162225 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 410149 18078167 ~ 18080332 (+)
G256852 NA non-coding upstream 412669 18076948 ~ 18077812 (+)
G256772 NA non-coding upstream 545382 17944895 ~ 17945099 (+)
G256771 NA non-coding upstream 547126 17943151 ~ 17943355 (+)
G257068 NA non-coding downstream 122847 18620249 ~ 18621305 (+)
LOC113530356 NA non-coding downstream 344351 18841753 ~ 18846347 (+)
G257127 NA non-coding downstream 394487 18891889 ~ 18936842 (+)
G257196 NA non-coding downstream 568452 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 620475 19117877 ~ 19118533 (+)
LOC113530386 slc26a9 other upstream 1302104 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1365530 17071136 ~ 17124951 (+)
G256046 NA other upstream 1982101 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2094236 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 2163867 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 382079 18879481 ~ 18934319 (+)
pkig NA other downstream 701024 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 980900 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 1128127 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1893407 20390809 ~ 20398714 (+)

Expression


Co-expression Network