scube3 (scube3,LOC108276393,LOC108439473,LOC106566910)


Basic Information

Item Value
gene id scube3
gene name scube3,LOC108276393,LOC108439473,LOC106566910
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22859162 ~ 22951930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920077.2
tctctctctctctctctctccgctccCTCTCTCCCATACAAACGGCTCGGAGGCGATCATGAGCAGTGACGCGCGCTCCTGTGCTCGCGCTGAACGCGGTGGTCGCTCCTCTTTCGCGAGCCGGACGCTATAACGGAGAGGATCCACGCGCAGGGAATAACGGCCACGCTTGCACGCACGAGCGTCCCTGAGCCTGAACTCCAAACTCAGACCCGGGATAAAAGTCTGgtccttcttcctcttcctcttcctcttcatcgGTCTCCTGGTTCTCCGCGCGCGCTGAGATGTTCCTCCAGGCGGTAGCGCGCGCCTGCGCCGGATTGGTGGCCTGCACCCTGCTCGCCTTTGTCCCGCAGCCGGCCACCGCATCCCTCAGCCGATCTGCACACGatgTGGACGAGTGCGTGGAGACGACGGACAACTGCAGCATTGACGCTATCTGCCAGAACACATTCAGATCGTACAAATGCATCTGCAAGTCCGGTTATAAAGGAGACGGAAAGCACTGTGAAGACATCGACGAGTGTGCAAGCGAATATAACGGAGGATGCGTCCACGAGTGCATCAACATCCCAGGAAACTACCGGTGCACGTGCTACGACGGCTTCCGCCTAGCACACGACGGCCATAACTGCCTGGatgTAGACGAGTGTTCGGAGGGTAATGGTGGCTgtcagcaggtgtgtgtgaacatgatgGGAAGTTATGAGTGTCGCTGTAAAGAGGGCTTCTTTCTGTCTGACAACCAGCACACCTGCATCCAGCGGCCCAAAGtGCGTATGAATGGGACAAAGGAAGGCCCCACTTGTATGGACAAAAACCACGGCTGTGCACATATCTGCAGGGAAACTCCAAAAGGAGGCATCGCCTGCGAGTGCAGACCGGGCTTCCAACTCACCAAGAACAACCGTGACTGCAAGTTGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAGACAGACCATGGGCCGCGCTGTTCTTGCCACATAAAGTTCGCCCTGCACTCTGATAGCAAGACATGTGTAGagGAAAGGAGTATACCGCCGCAGCCACATCAGCCACAGCTGTTACCCAATGAGACGTGTGCGGTGAATAATGGAGGATGTGACAGCACGTGTCACGATGCTCTAACAGGGGTGCGCTGCAGCTGTCCGGTCGGATTCACTCTTCAGCCTGACCGCAAGACCTGCAAAGATATCGATGAGTGCCGCATGAGTAATGGCAGCTGTGATCAGATTTGCCGGAACACAGTGGGAAGCTTCGAGTGTAGCTGCAGGAAGGGTTACAAGCTGCTCACCAATGAGAGGACCTGTCAAGaCATAGATGAGTGCTCGTTTGACCGCGCGTGTGACCACACCTGTGTGAACTCTCCAGGCAGTTTTGAGTGTCAGTGTCACAAAGGCTATGTCCTGTATGGAGTCGCTCACTGTGGAGACATCGATGAGTGCAGTATAAACCGTGGCGGCTGTAAGTATGGCTGTGTGAACACGTTGGGCAGCTACGAGTGTACATGCCCACCTGGATACAAACTGCACTGGAACAAGAAGGACTGTGTCGAGGTCATTAAGTGTCCATCCAGCCTGGTGGCGCCAAAAGCAACGCTCTCTTGCAGCAAGACAGGCAAAAAGGAGAGTTGTTCACTGACCTGTGCATCCAAGGCACACTATCTGGCAGAGTCCGACAACAGTTACACAGTCAGCTGCGGCGTCCGAGGAAAAAGCCAAAGTAGACTGAACTCCAGCAACAGCCAGAGCTGCATAGAGACTTTGGCTTCTCCAGTGAAGCAGACGGCATCGTTCCGAATCAAGAACGCCAAATGCCACCTGCACCCCAAACTCAAGGGACGAGCAGAAGATGGAGGCAAGCAGATTGGTCCAGGTGGTCAGCTCTGCAACAACTGCCAAGTCACCTTCGTCAATCTGAAGTGCGAGTCCTCCAAGAAGACCAAAATTCGCCACACACGTAACCCGTCTAATAAAGAGGTCACACGCATCACGCTGGAACTAGAAGCAGAGATAAAGCCTGGAGACACTACCGGGAGCTGTGACCTGAGCTGTGTGAGGAAACAAATGGAGCAGAAGATGAAGTCTTCCATCAAGGCACTGAAGAAGTCCATCAACCAGGAGAGGTTCCTCATCCGTGTGGCTGGTCTTGAGTATGAGGTCGCTCAGAAGGTTACACAATCCGCTGATAAACAGGAACACTGCGGCCCcgggagagagagggacagcGGCCGATGTGTCAGATGTTTGCCTGGTTCTTATTATCACGGCGAGATGGAGCGCTGTGTGCAGTGTCCACCCGGAACCTTCCAGGAGCGTGAGGGTCAACTGGCCTGTGACCTTTGCCCTGGAGAAGATCGCCATGGCTTGCCAGGCGCCCGTAACATCACTTCCTGCTCAGGTCAGTGTGCACCAGGATATTACTCCAGTGACGGCTTTAAACCGTGCCAACTGTGCCCTCGGGGCACATACCAGCCTGACCACGGAAGAACACTTTGCTTCCCTTGTGGAGGTGGCCTCgaaacaaagagagagggatCCAGCTCCTTCCATGACtgtgaggtcaaagTGTCTTGTCCTCCAGGCCATTACTACAACACCTCTGTGCATCGGTGTATCCGGTGTCCCGTGGGAACATATCAAACAGACTTCAAACAGAATTACTGCATCTCATGTCCTGGAAACACCACCACAGACTTTGATGGTGCAAccagtgtgtctcagtgcaaGAaCAGGGAATGCGGCGGTGAAATCGGAGAATATATTGGCTACATTGAGTCTCCGAACTACCCAGGAGATTATCCTGCTAACGTGGACTGCACCTGGACCATCAACCCCCCCAGCAAGCGCAAAATCCTCATCGTCGTTCCAGAGATCTTCCTCCCTTCTGAAGATGACTGTGGAGATGTGCTGGTGATGAGAAAGAACTGGTCAGTGACCTCCATAACCACGTATGAGACGTGTCAGACATACGAGCGGCCCATCGCCTTCACGGCTCGATCACGGCGCCTCTGGATCAATTTCAAATCCAACGACGTGAACAGTGCACGCGGCTTCCACATCCCTTACGTCACATATGATGAGGACTATGAGCAGCTGGTGGAAGACATCGTGAGAGATGGAAGACTTTATGCTTCAGAAAACCATCAAGAAATCCTGAAGGACAAAAAATTAATCAAGACGCTCTTTGACGTCCTGGCGCACCCGAATAACTACTACAAGTACACGGCTCGGGATTCCAACGAGATGCTGCCGCGCTCCTTCATCCGGCTTATCAGCAGCAAAGTCTCGGCCTTCCTTCGACCGTACAAGTAGCCGCTAACGCTCAGAGGCTTTACGCACTCCGGCCGACTCTGACAGCAGGCTTCAGTCTAAAGGATTCAGCACAcgctttgtttaaaaaaatccaaccaGGCTTTTGACTTTTACTCGCTTCACTATGCACATTTGGTTTTGAATTtctgtgctgtttatttttatcaatCCTTTCTGATAAGAAGAGGGCGATTAGGTGAATAATTGCATCATACATTTGCAGCATATGAGGGTTTTTTGCGCTTTTAGGTCCTGTCTTCATCACCATTCTGTATTGTGTTGATGTTTGTCTGGAATATATCAGAATATACAATGTAGAAGGTGTAATATTCCAGTGAGCACCATAATTATTgggacagttttttttcctgtgggcTGATTTTAAGTGTCATGCCTTGATCTGGCCCCTAAATAAGGCCTTTTTTTTGGTCCACATGAAGTTTGACATCTTGTATGTGACCAGAACAATCCCTAAAATGCATTCTGAATGTCTGTCTCATGCAGTTTAAGCATCTGTGCGCTCACTGGGATATCGCACATTTGGGTAGAGTTGCAAAGTTGACAGAAGGTGCGTCATTTTGTCAATAAGCAAGATGTGAGCTTCTGATTTACTTCGCAGTTTTCTGTAGCACCTCGCTATAGCGTTTGTATATCCATtgtatttctgtcttttccATGCTCTCATCCCCCTTTACTTCATATCATACGTTCCGTGTCATCATAGTTCAGCTCTTAGAGCATCTTTAGTCTTCCTGCCACGCTGTTAAAACAGTACATTCCTGTCTGTCGACGTTGTATTACTAGTTTTCGGTTTCATATTCGTTTACGACCATATATTGGAGTTAATTTAACGAGGCGTAGAACACGTAGTGCATTATTACGAGACTGAAACGGAAGAGTTGCGGTGAGAAACAGTGTTTAGTGAGCAGTTCTGCAGAGAACGAGGCTGagatgcgttttttt
>XM_026920078.2
tctctctctctctctctctccgctccCTCTCTCCCATACAAACGGCTCGGAGGCGATCATGAGCAGTGACGCGCGCTCCTGTGCTCGCGCTGAACGCGGTGGTCGCTCCTCTTTCGCGAGCCGGACGCTATAACGGAGAGGATCCACGCGCAGGGAATAACGGCCACGCTTGCACGCACGAGCGTCCCTGAGCCTGAACTCCAAACTCAGACCCGGGATAAAAGTCTGgtccttcttcctcttcctcttcctcttcatcgGTCTCCTGGTTCTCCGCGCGCGCTGAGATGTTCCTCCAGGCGGTAGCGCGCGCCTGCGCCGGATTGGTGGCCTGCACCCTGCTCGCCTTTGTCCCGCAGCCGGCCACCGCATCCCTCAGCCGATCTGCACACGatgTGGACGAGTGCGTGGAGACGACGGACAACTGCAGCATTGACGCTATCTGCCAGAACACATTCAGATCGTACAAATGCATCTGCAAGTCCGGTTATAAAGGAGACGGAAAGCACTGTGAAGACATCGACGAGTGTGCAAGCGAATATAACGGAGGATGCGTCCACGAGTGCATCAACATCCCAGGAAACTACCGGTGCACGTGCTACGACGGCTTCCGCCTAGCACACGACGGCCATAACTGCCTGGatgTAGACGAGTGTTCGGAGGGTAATGGTGGCTgtcagcaggtgtgtgtgaacatgatgGGAAGTTATGAGTGTCGCTGTAAAGAGGGCTTCTTTCTGTCTGACAACCAGCACACCTGCATCCAGCGGCCCAAAGtGCGTATGAATGGGACAAAGGAAGGCCCCACTTGTATGGACAAAAACCACGGCTGTGCACATATCTGCAGGGAAACTCCAAAAGGAGGCATCGCCTGCGAGTGCAGACCGGGCTTCCAACTCACCAAGAACAACCGTGACTGCAAGTTGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAGACAGACCATGGGCCGCGCTGTTCTTGCCACATAAAGTTCGCCCTGCACTCTGATAGCAAGACATGTGTAGAGACGTGTGCGGTGAATAATGGAGGATGTGACAGCACGTGTCACGATGCTCTAACAGGGGTGCGCTGCAGCTGTCCGGTCGGATTCACTCTTCAGCCTGACCGCAAGACCTGCAAAGATATCGATGAGTGCCGCATGAGTAATGGCAGCTGTGATCAGATTTGCCGGAACACAGTGGGAAGCTTCGAGTGTAGCTGCAGGAAGGGTTACAAGCTGCTCACCAATGAGAGGACCTGTCAAGaCATAGATGAGTGCTCGTTTGACCGCGCGTGTGACCACACCTGTGTGAACTCTCCAGGCAGTTTTGAGTGTCAGTGTCACAAAGGCTATGTCCTGTATGGAGTCGCTCACTGTGGAGACATCGATGAGTGCAGTATAAACCGTGGCGGCTGTAAGTATGGCTGTGTGAACACGTTGGGCAGCTACGAGTGTACATGCCCACCTGGATACAAACTGCACTGGAACAAGAAGGACTGTGTCGAGGTCATTAAGTGTCCATCCAGCCTGGTGGCGCCAAAAGCAACGCTCTCTTGCAGCAAGACAGGCAAAAAGGAGAGTTGTTCACTGACCTGTGCATCCAAGGCACACTATCTGGCAGAGTCCGACAACAGTTACACAGTCAGCTGCGGCGTCCGAGGAAAAAGCCAAAGTAGACTGAACTCCAGCAACAGCCAGAGCTGCATAGAGACTTTGGCTTCTCCAGTGAAGCAGACGGCATCGTTCCGAATCAAGAACGCCAAATGCCACCTGCACCCCAAACTCAAGGGACGAGCAGAAGATGGAGGCAAGCAGATTGGTCCAGGTGGTCAGCTCTGCAACAACTGCCAAGTCACCTTCGTCAATCTGAAGTGCGAGTCCTCCAAGAAGACCAAAATTCGCCACACACGTAACCCGTCTAATAAAGAGGTCACACGCATCACGCTGGAACTAGAAGCAGAGATAAAGCCTGGAGACACTACCGGGAGCTGTGACCTGAGCTGTGTGAGGAAACAAATGGAGCAGAAGATGAAGTCTTCCATCAAGGCACTGAAGAAGTCCATCAACCAGGAGAGGTTCCTCATCCGTGTGGCTGGTCTTGAGTATGAGGTCGCTCAGAAGGTTACACAATCCGCTGATAAACAGGAACACTGCGGCCCcgggagagagagggacagcGGCCGATGTGTCAGATGTTTGCCTGGTTCTTATTATCACGGCGAGATGGAGCGCTGTGTGCAGTGTCCACCCGGAACCTTCCAGGAGCGTGAGGGTCAACTGGCCTGTGACCTTTGCCCTGGAGAAGATCGCCATGGCTTGCCAGGCGCCCGTAACATCACTTCCTGCTCAGGTCAGTGTGCACCAGGATATTACTCCAGTGACGGCTTTAAACCGTGCCAACTGTGCCCTCGGGGCACATACCAGCCTGACCACGGAAGAACACTTTGCTTCCCTTGTGGAGGTGGCCTCgaaacaaagagagagggatCCAGCTCCTTCCATGACtgtgaggtcaaagTGTCTTGTCCTCCAGGCCATTACTACAACACCTCTGTGCATCGGTGTATCCGGTGTCCCGTGGGAACATATCAAACAGACTTCAAACAGAATTACTGCATCTCATGTCCTGGAAACACCACCACAGACTTTGATGGTGCAAccagtgtgtctcagtgcaaGAaCAGGGAATGCGGCGGTGAAATCGGAGAATATATTGGCTACATTGAGTCTCCGAACTACCCAGGAGATTATCCTGCTAACGTGGACTGCACCTGGACCATCAACCCCCCCAGCAAGCGCAAAATCCTCATCGTCGTTCCAGAGATCTTCCTCCCTTCTGAAGATGACTGTGGAGATGTGCTGGTGATGAGAAAGAACTGGTCAGTGACCTCCATAACCACGTATGAGACGTGTCAGACATACGAGCGGCCCATCGCCTTCACGGCTCGATCACGGCGCCTCTGGATCAATTTCAAATCCAACGACGTGAACAGTGCACGCGGCTTCCACATCCCTTACGTCACATATGATGAGGACTATGAGCAGCTGGTGGAAGACATCGTGAGAGATGGAAGACTTTATGCTTCAGAAAACCATCAAGAAATCCTGAAGGACAAAAAATTAATCAAGACGCTCTTTGACGTCCTGGCGCACCCGAATAACTACTACAAGTACACGGCTCGGGATTCCAACGAGATGCTGCCGCGCTCCTTCATCCGGCTTATCAGCAGCAAAGTCTCGGCCTTCCTTCGACCGTACAAGTAGCCGCTAACGCTCAGAGGCTTTACGCACTCCGGCCGACTCTGACAGCAGGCTTCAGTCTAAAGGATTCAGCACAcgctttgtttaaaaaaatccaaccaGGCTTTTGACTTTTACTCGCTTCACTATGCACATTTGGTTTTGAATTtctgtgctgtttatttttatcaatCCTTTCTGATAAGAAGAGGGCGATTAGGTGAATAATTGCATCATACATTTGCAGCATATGAGGGTTTTTTGCGCTTTTAGGTCCTGTCTTCATCACCATTCTGTATTGTGTTGATGTTTGTCTGGAATATATCAGAATATACAATGTAGAAGGTGTAATATTCCAGTGAGCACCATAATTATTgggacagttttttttcctgtgggcTGATTTTAAGTGTCATGCCTTGATCTGGCCCCTAAATAAGGCCTTTTTTTTGGTCCACATGAAGTTTGACATCTTGTATGTGACCAGAACAATCCCTAAAATGCATTCTGAATGTCTGTCTCATGCAGTTTAAGCATCTGTGCGCTCACTGGGATATCGCACATTTGGGTAGAGTTGCAAAGTTGACAGAAGGTGCGTCATTTTGTCAATAAGCAAGATGTGAGCTTCTGATTTACTTCGCAGTTTTCTGTAGCACCTCGCTATAGCGTTTGTATATCCATtgtatttctgtcttttccATGCTCTCATCCCCCTTTACTTCATATCATACGTTCCGTGTCATCATAGTTCAGCTCTTAGAGCATCTTTAGTCTTCCTGCCACGCTGTTAAAACAGTACATTCCTGTCTGTCGACGTTGTATTACTAGTTTTCGGTTTCATATTCGTTTACGACCATATATTGGAGTTAATTTAACGAGGCGTAGAACACGTAGTGCATTATTACGAGACTGAAACGGAAGAGTTGCGGTGAGAAACAGTGTTTAGTGAGCAGTTCTGCAGAGAACGAGGCTGagatgcgttttttt

Function

symbol description
scube3 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

NR:

description
PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 3 isoform X1

GO: NA

KEGG:

id description
K24468 SCUBE1_3; signal peptide, CUB and EGF-like domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920077.2 True 4295 mRNA 0.51 23 22859162 22951930
XM_026920078.2 False 4244 mRNA 0.51 22 22859162 22951930

Neighbor

gene id symbol gene type direction distance location
LOC113530963 LOC108275977 coding upstream 7734 22834522 ~ 22851428 (+)
stk35 stk35,LOC108439475,LOC107590481 coding upstream 75701 22775731 ~ 22783461 (+)
gmeb2 gmeb2 coding upstream 103229 22745066 ~ 22755933 (+)
LOC113530713 dad1 coding upstream 115137 22742054 ~ 22744025 (+)
LOC113530788 LOC108275601 coding upstream 124139 22721758 ~ 22735023 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding downstream 54636 23006566 ~ 23011461 (+)
si:dkey-65j6.2 kiaa1755 coding downstream 200674 23152604 ~ 23171751 (+)
tgm2a tgm2 coding downstream 220327 23172257 ~ 23179323 (+)
tti1 tti1 coding downstream 234561 23186491 ~ 23195255 (+)
znf341 znf341 coding downstream 367431 23319361 ~ 23331266 (+)
G259498 NA non-coding upstream 17423 22839217 ~ 22841739 (+)
G259403 NA non-coding upstream 273353 22584557 ~ 22585809 (+)
G259268 NA non-coding upstream 356257 22502687 ~ 22502905 (+)
G259267 NA non-coding upstream 378062 22480557 ~ 22481100 (+)
LOC117599300 NA non-coding upstream 628482 22227964 ~ 22230680 (+)
G259536 NA non-coding downstream 61454 23013384 ~ 23015896 (+)
G259539 NA non-coding downstream 70040 23021970 ~ 23022448 (+)
G259540 LOC108276061 non-coding downstream 74516 23026446 ~ 23064569 (+)
G259690 ctnnbl1,LOC106942865 non-coding downstream 325504 23277434 ~ 23277909 (+)
G259962 NA non-coding downstream 355825 23307755 ~ 23308592 (+)
LOC113530514 LOC108275916 other upstream 178620 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1316735 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1620163 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1951703 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2344967 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 419814 23371744 ~ 23383653 (+)
G259993 NA other downstream 435608 23387538 ~ 23389314 (+)
G260415 NA other downstream 1080297 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1316647 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1448654 24400584 ~ 24453538 (+)

Expression


Co-expression Network