LOC113530257 (LOC108275533,LOC108435580,LOC107565311,LOC107570205)


Basic Information

Item Value
gene id LOC113530257
gene name LOC108275533,LOC108435580,LOC107565311,LOC107570205
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21242246 ~ 21257288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920081.2
TTCTCGTCAGCGGCCATGCTGCCCCGGTCACAGCGCGGCGCGCCCAGCACCTGCACGGAGCGAGCATCCATCCTCCAGTGGGACTTACACAGGCTGTGTGCTGAAGTGTGGTGCTCGTGTTAGTGTATTTAACTTTCTTTTAAGTGCGGTGTCGGATTTTGGATTTTTATGCCACAATCCTCGGACTGAAATCGATTGCACTGAATCTGGATTATTCCCGGTCATAGCGGCGGCGCTTACCGGCtgactgcagtgttttattgtaGTGTGAGCTGTTCATGGAAGAATCTATTAGAGGAAGCAGAGGTGCAGTACGTGTATTACGCTTTTGTGCCGAGTGTAGAAGTAAATGATGCTCGCGTGCCGCACGCCGCCCCTCTCTCAGAGGGGGTCACCCCGCCGTCTGAGCGCGCCCCGGCAGGCGTGAGGGATCAGCGCGTCGTGTAGACCCGGGAGCCGGTGACAAAAAGCGCATCGGGCTCCCTCTGCAGCACATAAATAACCAGAACGTGTCATATAAGGTAAAAAATGGCTCTGAACAGAAGCATCGAGCTGGAGCACTTTGACGAACGGGACAAGGCTCGGCGCTCGACGCGCGCCACCGGCTCCGGTTCTCAGTCCGGGTCCCGGGCGAGCAGCCTGGTGCCCAGCCCCGCTCAGAGCGCCAACTGCAGCTTCTACCGGACCCGCACTCTCCGCGCGCTCAGCTCCGAGAAGCGGGCGCGCAAGGTACGCTTTTACCGCAACGGGGACCGCTACTTCAAAGGGCTCGTCTACGCCGTGTCCAACGACCGCTTCCGGTCTCTGGACGCGCTGCTGGCTGAGCTGACGCGCGCGCTCGCCGACAACCTGCACCTGCCGCAGGGCGTCCGCACCATCTACACGGCGGACGGCAGCAAGAGGGTGACGAGCTTAGACGAGCTGGTGGAAGGTGAGAGCTACGTTTGTGCATCTAATGAGCCCTACAGGAAAGTGGACTACACTAAGAATGTGAATCCTAACTGGGGTTCTCGGCTGGCGGGGACAGGTGCAGTGGCCGTGGTGGGCCGTCCGGGTTCGAGCGGGGGCCAGCGGGCACCGGGGGAGGGAAAAGAGAGTAAAGACTTTATCAAACCTAAGCTGGTGACAGTGATCCGGAGTGGTGTGAAGCCACGCAAGGCTGTCAGAGTGCTGCTGAATAAAAAGACGGCTCACTCTTTCGAGCAGGTGCTGGCTGATATTACAGAGGCCATTAAGCTCGACTCTGGAGCCGTGAAGAAGCTGTACACACTAGACGGGAAGCAGCTGACAAGCCTGCAGGACTTTTTTGGTGATGATGACGTGTTTATTGCATGCGGTCTTGAGAAGTTCCGCTACGCTCAGGACGATGCTGCAATCGGACATGCAGGGAAAGCCTCGGCCGCTGCATTCGTTAATGaGTGTAAGATGAAATCATCAAAGTCGTCAGCTCCTATTAAGTCCACTGTCCCAAGAAGCTCTGGCCTTTTCAGGTCAAAATCACCTTTGTCAGCCAATGAGGCGCCGAGAAGTCAGAGCCCAACTGCGAGGTCATCAAAATCCCCAACGAGCCCAGCAAGTCCACGCAGCCAGAAGATCTCTTCCCGTCATGTATCTCCCTCCCCTCCCCCCTCTGGAGAACTGAATGGAGAAGAGGACTTGAGCCCAGAAGTAAATGGAAATAAGCCGCAGTCCTCCATCATCACCGATAAGTACGAGGTGGGGAAAGTCATCGGAGACGGAAACTTTGCAGTGGTCAAAGAGTGTGTGGAGCGggCCACCGGGCAGGAGTATGCTCTGAAGATCATAGACAAGGCCAAATGCAGTGGGAAGGAGCATCTGATAGCCAATGAGGTAGCAATATTGCGCCGGGTTCGGCACCCCAGCATCATCCTGTTAATTGAGGAGGTGGACACACCCACAGAGCTCTACTTGGTCATGGAGCTTGTTAAGGGAGGAGATTTGTTCGATGCCATCACCTCTTCCACAAAGTACACCGAGAGAGATGCCAGTGCCATGGTGTACAACCTGACCGGAGCTCTCAAATATCTGCACCGCATGAGCATAGTGCACCGAGACATTAAACCAGAGAATCTtctggtgtgtgaatATCCTGATGGTACCAAGTCTCTGAAGTTGGGGGATTTTGGTCTGGCCACCGTAGTGGAGGGGCCGCTTTATACCGTCTGTGGAACACCCACTTACGTCGCACCTGAGATTATTGCAGAAACAGggtaTGGTTTAAAGGTGGATATCTGGGCGGCTGGTGTGATCACGTACATCCTCCTGTGTGGTTTTCCTCCATTCCGGAGTGAGAGGAACCAGCAGGAGGAGCTGTTTGAACAGATCTTACGGGGCCGACTAGAGTTTCCCTCCCCTTACTGGGACAATATCAGTGCCAGCGCCAAGGATCTGATTGGTAAGATGCTGCAGGTGAATGTGAGTGCACGCTACACAGCAGAGGAGGTTTTGTCTCACCCATGGGTCCTGGATGACGCCATGCTGGAGAACAATATGATGTGCGAGACATCGGATGCAGTCAAAACTGAACATACACCTGACAGCACTGCAACAGAAACACAGTTGGATGAGCTGCGAGGTAAAGAGCAAAGCCCAAGGTAGACAGCAAGAGGACCAGCAGAAGAGAGGAACTTTTCACTCAACAAAACCCAAAGGAATACTTTACCCAGAAATTCTAACATGGATGACAGGATCCTAATTAGAGACAAGAATAATGCTGTCTCTATAAGCGCCTACTAGCTTCTATTTTATAGCtatgggctgtattcagagttgagttaaatACGTGTAGTACCATAATACGGAAATTGCAGACATTGATATTCAGACGTAAGATGTAACCACAGACTGATGCGCTACTCAGACAGTTTTATTCATATATCATTGTATTGGTCTTGCTTTAATGTTACATCGTATTACATTTAACAGCAAAATAGAAACACAatgtccttccttccttccagtCCTTATTCTAGCCTGTTTTTCAGGGGCTTCTGTTTAAAGGAGCAGTGGTCTAGATGCTGTTGAAAATCCCTGTCTTGGAtgtttctactcaagaaaaatctggcaatgtcagaggtgtgaactacatgcaggtgattttaataatcagaaTGAGCTGTCCTTAAGTATGTgcataacccaactctgaatacaaggaactttccttCTCACTGACTCTGACTATGGCCCAATGTGAGCATTTCTGGGTGTAGTACACCTTTAAAGCTTGATGCTCAGCTAAATCTAAATCCATTGAGCTGTGATTAATTACACCAGACCAGCAAGacctctctctcttgttcttctTTCTCACGTTCTTCTGACCCTGTCGCATTTTGTTCTGTCTATTTCTCCCCTCAGCTGAACAAATGCCTCCCCCCCCATTTATTGTACTGctatgaccttttttttttggaagaggTGAATCATAAGAGGACTGCAACAAATTGCACAACAACAGTATGGCAAAGACCAACACAAGACCAGAACCTGTATTCTCCAATCTCATGCCTATGATGGCACCTGGTGTGTGATAGCTCGCAGATTCTCCAAACAAACCAGCAACCTCATTTATACTCCGCTGTGCCATTCTTTgcctatctctctttttttctgtatatacgGTGTCTCGATGTGAAAATCATTGATCCGAGTCAGTAGATTAATCCATTTCAGTATACTTAGaattagggctgggcaatatgacgatataatattgatattgtggtAAATTATATCATGATACACCTTTCTGAGATATCCCAGGCATtaagctattttttattttttttaataacttttataatttttaatttacattggAAGctgatttgaatttaaaatgtggttctgaatctttaaaattgtaaaatgttagaattttattatatttaatttaaatttatttgtataaatgtatgtattttttattatttgaaacaATTTGACATCAAAGTATCATCATactttacagtttttttattaatatattgtgatacatatggtgtatcacagaaatgtcttcaaatattgtgatatgatatgatatgatattatagtcatatcgcccacccctcCTTAGAACTTTCAGCCACTCCTTCGACATCTAATAGACATATTATTTCCTACATAAAAAGCATCTGATTATGTATGCAGTATGGGAGGAAACGGTTTGGCAGTTTGTGTCCTTTGGCAACCTGATATCAGGAAGTGTTCAATTTTGCTTTATGCCAAAATATGGCTGGCATCCAACGgatgaaaagaacagaaatgcagtattgtcggtgtgtgtgtccatgaatCAGCGCCTTGTAGTCTTTCTCAAATGTAGTGATCCATTTTTTCatctaaaagagaaaaatgggaATGCGAATGACATGGAATGATTGTCATATGTGTAATAGTATTAACTTTTGTACCATGACTATTTAGGCCAAGTGTTTCATGTCTACACTGTAGGGTTGGTTATCTCATGTTTTACTTTGTACTGCAACAATACATCGTTAGTAGCTGGAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08805 DCLK1_2; doublecortin-like kinase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920081.2 True 4538 mRNA 0.47 16 21242246 21257288

Neighbor

gene id symbol gene type direction distance location
egr4 LOC108275472,LOC107734701 coding upstream 14503 21225341 ~ 21227743 (+)
LOC113530738 si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918 coding upstream 29982 21202490 ~ 21212264 (+)
si:ch73-217b7.1 map7 coding upstream 70320 21138225 ~ 21171926 (+)
agmat agmat,LOC102790280,LOC105912720 coding upstream 169189 21068173 ~ 21073057 (+)
pink1 pink1 coding upstream 175029 21063095 ~ 21067217 (+)
LOC113530283 LOC108276019 coding downstream 18142 21275430 ~ 21287608 (+)
LOC117599257 NA coding downstream 52787 21310075 ~ 21312795 (+)
ttc29 ttc29 coding downstream 58093 21315381 ~ 21323223 (+)
calcrl2 LOC108276023 coding downstream 66636 21323924 ~ 21352016 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding downstream 120841 21378129 ~ 21437863 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 110193 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 134231 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 137145 21103714 ~ 21105101 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding upstream 148402 21093329 ~ 21093844 (+)
G258460 NA non-coding upstream 154024 21085382 ~ 21088222 (+)
G258680 NA non-coding downstream 97152 21354440 ~ 21354730 (+)
G258689 NA non-coding downstream 127003 21384291 ~ 21386101 (+)
G258753 NA non-coding downstream 221944 21479232 ~ 21556438 (+)
G258758 NA non-coding downstream 242690 21499978 ~ 21510994 (+)
LOC113530300 NA non-coding downstream 343334 21600622 ~ 21602468 (+)
si:ch73-290k24.5 LOC108275473 other upstream 3247 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 334787 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 728051 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 843532 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1537183 19625529 ~ 19705063 (+)
LOC117599233 NA other downstream 280757 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1414110 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2114456 23371744 ~ 23383653 (+)
G259993 NA other downstream 2130250 23387538 ~ 23389314 (+)
G260415 NA other downstream 2774939 24032227 ~ 24032724 (+)

Expression


Co-expression Network