nsfl1c (nsfl1c)


Basic Information

Item Value
gene id nsfl1c
gene name nsfl1c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11429838 ~ 11437645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920082.2
CCTAAATCGGAACCGAAGTTTTCAGTCCACTGTTTCCCGTCGAGCAGTCGGACCTAGCTGCAGTTCCACACAGCAAAATGGCGTCGCGGGATGAATCGGTGAGGGAGTTTGTTGCAGTTACCGGTGTTGAGGAGGAGAGAGCCCGGTTTTTCCTCGAATCAGCTGGCTGGGATTTGCAGCTTGCCCTTGCCAGCTTCTTTGAGGATGGAGGAGATGATGATATTGTTACCCTTCCTCAGCCAGAAAGCGGCCCGGGCCCTCGATCCACAGGACCAAGTGAACACCGAGTGACTTCCTTCAGAGACTTGAGgcatgaagatgaagaggagagTGATGAagaaggtcagagGTTCTTCGCTGGTGGTTCAGAACGCAGTGGTCAGCAGATTGTTGGTCCACCCAAGAAGAAGAGCACAAATGAGGTGGTTGAGGACTTGTTCAAGGGTGCTAAGGAGCACGGGGCCGTTCCAGTCGACAGAGCAGGCAAAGGGCCTGGAGAGTCTAGCAGGGCTAAGGCGTTTGTAGGAGGTGGTTATCGTCTGGGTGCAGCACCAGAAGAAGAGTCCGCCTACGTGGCTGGAGAGAGGAGATCCGCTAACAGTGCACAAGATGTACATGTGGTGCTGAAGCTGTGGAAGACAGGATTCAGCCTTGATGATGGAGAGCTCAGAAACTACAATGATCCTGGGAATGCCCTCTTCCTGGAGTCCATCCGCAGGGGGGAGATTCCTCTGGAGCTGAGGCAGCGCTCTCGTGGTGGGCAGGTGAATCTGGATATGGAGGACCATAGGGACGAAGACTTCATCAGACCCAAGTCTGCCTTCAAGGCTTTTACTGGGGAGGGGCAGAAACTGGGCAGTGCCACTCCAGAATTGGTATCTGTCCCAAGAATGGATCAGGCACATCAGGCTGCGAGCGAGGCTCAGGCCTGCGCATCTATTAGCGTGGATGAGTCGCAGCCCGTCACCAACATCCAGATCAGACTGGCTGATGGAGGACGACTGGTGCAGAAGTTTAACCACACCCACAGGGTCTCTGATGTACGCCAGTTTGTGGTGAACGCTCGGCCAGCCATGGCTGCAGCGGAGTTTGTCCTCATGACAACTTTCCCCAACAAGGAGCTGACAGACGAGAGTCTGACACTGAAGGAGGCCAACCTGCTGAACGCAGTCATTGTGCAGCGGCTAAAGTGATGATGCCTTGTAGTGGCTATGTTTTATCACAGCACTCTGAGTTTCCTACTCAGTGGGGGATGTATGGACTTGAGGACTTATCATTACTTAATTTTTCTTTCCTTAGTGACATTTTTCCTCTTTGGCAATTTTGTGATGGTGTGTACCTTTTGGATATGACAGAATGGAgcaggggaaaaataaaaataattcctaTGAGATGCGTTAATGGAAGGAGAGAAGTATGGAGTTTCCCTACATAATttaccaattaaaaaaaatactaggaAAACACACccaaactgaaaataaagagcttTCTAAATAGTTTTCACCTCAATGTTTTTACCTCAGTGTTTCTTAAGCAGTTCTACTGTTCTTCTTTTAcctcttcattttctcttttcttaatGCAATCTGTCTCTCACCATAATCACCACTCTCACCAAACTCCCAATGCCTTTAGCCTTATAATCCAACACCCACTCCAATGGACTTCAGATTTAATTGCAAcacaaaaaagttaaaatattttttctattgttttttttttttcctttcagtaaGAAAGCTGATGATTAACactaaaatggtttatttttaattgacaGCTGCACCTTATTCATTTTGTTGCCTGATTATATGCTAGCAAGATAAGAAAATAGCTGGTTGAGCCGACCACTTGCTTTGCTGCTAAACACATCGGCAGCTATATTGTATTCTATGCAGCCACTTGTAGAACTGGAGACACTGCGTGGTTGTGTGGAGATGTGGTAATTCTGCGATTAAAATCTCTctgtctacctatcta

Function

symbol description
nsfl1c Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in Golgi stack. Predicted to be active in cytosol and nucleus. Orthologous to human NSFL1C (NSFL1 cofactor).

NR:

description
PREDICTED: NSFL1 cofactor p47 isoform X1

GO: NA

KEGG:

id description
K14012 NSFL1C, UBX1, SHP1; UBX domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920082.2 True 1983 mRNA 0.47 9 11429838 11437645

Neighbor

gene id symbol gene type direction distance location
bcl2l1 bcl2l1 coding upstream 60114 11344353 ~ 11369724 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding upstream 88312 11310969 ~ 11341526 (+)
pard6b pard6b,LOC108436329 coding upstream 127835 11279829 ~ 11302003 (+)
trnaf-gaa_28 NA coding upstream 162155 11267611 ~ 11267683 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 165445 11260774 ~ 11264393 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding downstream 6749 11444394 ~ 11453985 (+)
zgc:158296 LOC108275955 coding downstream 71857 11509502 ~ 11512493 (+)
ikbkg ikbkg coding downstream 78744 11516389 ~ 11528319 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding downstream 93005 11530650 ~ 11533250 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding downstream 96010 11533655 ~ 11542024 (+)
G253212 NA non-coding upstream 53218 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 57486 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 182976 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 184366 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 325311 11104139 ~ 11104527 (+)
G253248 NA non-coding downstream 24069 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 291395 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 345263 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 359612 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 501434 11939079 ~ 11941237 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 14389 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 192471 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 516242 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 577310 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 649978 10772671 ~ 10779860 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 32406 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 45774 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 156859 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 454505 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 675977 12113622 ~ 12121372 (+)

Expression


Co-expression Network