Item | Value |
---|---|
gene id | LOC113530266 |
gene name | dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047610.1 |
NCBI id | CM018556.1 |
chromosome length | 25111544 |
location | 12366613 ~ 12385996 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
dnmt3bb.2 | Predicted to enable DNA (cytosine-5-)-methyltransferase activity; DNA binding activity; and metal ion binding activity. Acts upstream of or within several processes, including exocrine pancreas development; eye morphogenesis; and pharyngeal system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; digestive system; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including acute myeloid leukemia; autoimmune disease (multiple); carcinoma (multiple); immunodeficiency-centromeric instability-facial anomalies syndrome 1; and thymoma. Orthologous to human DNMT3B (DNA methyltransferase 3 beta). |
dnmt3b | Enables DNA (cytosine-5-)-methyltransferase activity and transcription corepressor activity. Involved in regulation of gene expression and regulation of histone methylation. Located in nucleoplasm. Implicated in several diseases, including acute myeloid leukemia; autoimmune disease (multiple); carcinoma (multiple); immunodeficiency-centromeric instability-facial anomalies syndrome 1; and thymoma. Biomarker of several diseases, including autoimmune disease (multiple); endometriosis (multiple); gastrointestinal system cancer (multiple); myeloid leukemia (multiple); and pancreatic ductal carcinoma. |
id | name | namespace |
---|---|---|
GO:0042462 | eye photoreceptor cell development | biological_process |
GO:0031017 | exocrine pancreas development | biological_process |
GO:0051570 | regulation of histone H3-K9 methylation | biological_process |
GO:0032776 | DNA methylation on cytosine | biological_process |
GO:0060037 | pharyngeal system development | biological_process |
GO:0010842 | retina layer formation | biological_process |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026920095.2 | True | 5461 | mRNA | 0.43 | 25 | 12366751 | 12385996 |
XM_034311978.1 | False | 4937 | mRNA | 0.44 | 26 | 12366613 | 12385996 |
XM_034311980.1 | False | 4759 | mRNA | 0.44 | 25 | 12366662 | 12385996 |
XM_034311981.1 | False | 5450 | mRNA | 0.43 | 25 | 12367486 | 12385996 |
XM_034311982.1 | False | 5339 | mRNA | 0.43 | 24 | 12366747 | 12385996 |
XR_004579730.1 | False | 4732 | misc_RNA | 0.44 | 21 | 12366743 | 12384574 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
dnmt3bb.1 | dnmt3bb.1,LOC108276083,LOC108435229,LOC107672053,LOC107563667,LOC107747976,LOC107657059,LOC107603157 | coding | upstream | 2465 | 12316915 ~ 12364148 (+) |
tpd52l2b | tpd52l2,tpd52l2b,LOC108276205,LOC108435235 | coding | upstream | 228795 | 12123131 ~ 12137818 (+) |
dnajc5ab | LOC108276181,LOC108435236,LOC107103370 | coding | upstream | 254460 | 12089547 ~ 12112153 (+) |
bhlhe23 | bhlhe23 | coding | upstream | 343175 | 12021656 ~ 12023438 (+) |
tfip11 | tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 | coding | upstream | 458695 | 11900398 ~ 11907918 (+) |
cdc42l2 | cdc42,LOC101164400,LOC100697482,LOC107083933,LOC107390475,LOC103144004 | coding | downstream | 1281 | 12387277 ~ 12395268 (+) |
LOC113530972 | LOC108276377 | coding | downstream | 30002 | 12415998 ~ 12460374 (+) |
sdcbp2 | sdcb1,LOC104919459,LOC100705458,LOC108435221,LOC101477225,LOC106572119 | coding | downstream | 81465 | 12467461 ~ 12484986 (+) |
gata5 | gata5,LOC106912840,LOC103133197 | coding | downstream | 412511 | 12798507 ~ 12806883 (+) |
hck | hck,LOC107747493,LOC107690859,LOC107707747 | coding | downstream | 470325 | 12856321 ~ 12874255 (+) |
G253798 | NA | non-coding | upstream | 152 | 12366060 ~ 12366461 (+) |
G253599 | NA | non-coding | upstream | 282957 | 12083043 ~ 12083656 (+) |
G253593 | NA | non-coding | upstream | 353118 | 12013279 ~ 12013495 (+) |
LOC113530280 | NA | non-coding | upstream | 374492 | 11991640 ~ 11992121 (+) |
LOC117599216 | NA | non-coding | upstream | 392069 | 11946332 ~ 11974544 (+) |
G253835 | NA | non-coding | downstream | 15618 | 12401614 ~ 12406705 (+) |
G253846 | NA | non-coding | downstream | 30961 | 12416957 ~ 12419048 (+) |
G253847 | NA | non-coding | downstream | 36102 | 12422098 ~ 12423038 (+) |
G253870 | NA | non-coding | downstream | 99660 | 12485656 ~ 12487900 (+) |
G253877 | NA | non-coding | downstream | 119548 | 12505544 ~ 12506246 (+) |
ppdpfb | pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 | other | upstream | 223086 | 12141472 ~ 12143527 (+) |
trim101 | LOC108276180 | other | upstream | 245241 | 12113622 ~ 12121372 (+) |
G253367 | naca,LOC106571941 | other | upstream | 466249 | 11892150 ~ 11900364 (+) |
hsd17b10 | hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 | other | upstream | 725706 | 11594504 ~ 11640907 (+) |
arhgap4b | arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 | other | upstream | 858863 | 11483419 ~ 11507750 (+) |
rbbp8l | rbbp8nl | other | downstream | 451055 | 12837051 ~ 12854380 (+) |
kif3b | kif3b,LOC107690851,LOC107558233,LOC107559485 | other | downstream | 570134 | 12956130 ~ 12970009 (+) |
wfdc2 | wfdc3,LOC108276102,LOC105013800 | other | downstream | 1684232 | 14070228 ~ 14072216 (+) |
G254991 | krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 | other | downstream | 2236321 | 14622317 ~ 14673952 (+) |
rps21 | rps21,LOC107666483 | other | downstream | 2731074 | 15117070 ~ 15167668 (+) |