tnnc2 (LOC108434847,LOC108276484,LOC103044421)


Basic Information

Item Value
gene id tnnc2
gene name LOC108434847,LOC108276484,LOC103044421
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10620673 ~ 10623793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920104.2
GTGGCCTCGGCCGACCTGTTTAAAGTGTGTCTGAACCCTCCTTTGACGTCTAGTCTATCTGTTGGGGTGCACGCGGATTGACCACTCCTTTGGGCTTGATTGGTGGATAATAGTGGGGAAAACTAATCCACAACCATGACTGATGCGCAGCAGGAGGCCCGCTCCTACCTGAGCGAGGAGATGCTCGCCGAGTTCAAAGCTGCCTTCGATATGTTTGATACCGACGGTGGCGGCGATATCAGCACCAAGGAGTTGGGTACCGTGATGAGGATGTTGGGTCAGAATCCAACCAGAGAGGAGTTAAATGAAATCATTGAGGAGGTCGATGAGGACGGCAGCGGTACTATTGACTTTGAGGAGTTCTTGGTCATGATGGTGAGGCTCCTAAAGGAGGACCAGGCTGGCAAGAGTGAGGAAGAGTTGGCAGAATGCTTCCGTGTGTTTGACAAGAACGCCGACGGCTACATTGACAGAGACGAGTTTGCCGAGATCATCCGCAGCACTGGCGAGGCTATCACAGAGGACGAGATCGATGAGCTGCTGAAGGAAGGAGACAAAAACGCAGATGGCATGCTGGACTTTGATGaattccTCAAGATGATGGAGAATGTGCAGTAAAACAGAGACTCATGGACATTCCTCTACCCTTTGACCCCCCTGTCAACTCAACCCCATCCCCTCAAACTCACTCATGACCCCTTACCATCTGGTCCGTTGCCTCTCATCGTCCAACTTGACAACTATGCCGCTTCAACAGACATACAGACGAACACCCGAATAAGGTCTGCTAAGGTGCAACACATGATGCTCATACTCCAGGGAGAACCCTGCATGTTCCTGCAAGAGCACAAGAGCCAAGCAGTGGTGTGTGGTTTGCAGCACCATTATATTACTTTGCGAAATAGATCAACAGCTCATACTGTGGTAGACCGCACATGGCTGGGAGTTTTAGTCTACATTTAGACTAGATCAGCAGCTTGTTATCGCTGCCTAGACCAATGCTAAAACCTCTTACACGTCACCATATTTAAACAAATGCTTGAAAGAacggaataaaaaaataaaacacatgctcgTATTTAGTTGGTCTGATGTTTGTAAGTTTTTGTTTTGAGGAGGTTGccaataaagctttttttttttttctcccccaagTGTCATTGAAACAAATAAAGTTTAAGATTACTGGTTATTTAAATGAA

Function

NR:

description
PREDICTED: troponin C, skeletal muscle

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12042 TNNC2; troponin C, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920104.2 True 1202 mRNA 0.47 6 10620673 10623793

Neighbor

gene id symbol gene type direction distance location
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding downstream 1008 10570109 ~ 10619665 (-)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953,LOC106566454 coding downstream 51914 10562324 ~ 10568759 (-)
adnpb LOC108275936 coding downstream 59202 10548390 ~ 10561471 (-)
camkvl camkvl,LOC108275516,LOC106572974,LOC101077320 coding downstream 90956 10497718 ~ 10529717 (-)
uba1 uba1,LOC107737583,LOC107699604,LOC107593395 coding downstream 124546 10480490 ~ 10496127 (-)
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding upstream 1847 10625640 ~ 10630261 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 172014 10795807 ~ 10798598 (-)
cfap126 LOC108276287,LOC108276289 coding upstream 229224 10853017 ~ 10856962 (-)
emd LOC108275784 coding upstream 308313 10932106 ~ 10941252 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding upstream 319082 10942875 ~ 10973775 (-)
G252610 NA non-coding downstream 223933 10396395 ~ 10396740 (-)
LOC117599279 NA non-coding downstream 331989 10244041 ~ 10288684 (-)
LOC117599207 NA non-coding downstream 438785 10179788 ~ 10181888 (-)
G252479 NA non-coding downstream 564590 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 700525 9917429 ~ 9920148 (-)
G252783 NA non-coding upstream 31521 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 86602 10710395 ~ 10711491 (-)
G252856 NA non-coding upstream 155192 10778985 ~ 10779600 (-)
G252859 lrrc23 non-coding upstream 158342 10782135 ~ 10782588 (-)
G252920 NA non-coding upstream 241567 10865360 ~ 10865700 (-)
usp21 LOC108276040,LOC108432659 other downstream 150877 10460694 ~ 10469796 (-)
G252373 NA other downstream 590680 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 849110 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2042073 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 3110882 7476205 ~ 7509791 (-)
sinup NA other upstream 12708 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 385670 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 396738 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 832227 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 925601 11549394 ~ 11568603 (-)

Expression


Co-expression Network