LOC113530271 (LOC108276422)


Basic Information

Item Value
gene id LOC113530271
gene name LOC108276422
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10181492 ~ 10189088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920105.2
ACCAATCCATATAAATTGTTCCCACTGTTCGCTTTCAGTTGATTTGTAGAGCTTTGaatgtgtgttggttttgtttCCGCGAGATTTTATTATCGCGTACTAATAATTTCACTGATATCACAGTTGGAAATTCTGAAAACGACCAGCTTGCTGTAAACGCGGGATTTCAGAGAGCAACACAACGGAAGAAGTAATTAACCTGAGAGCACAGAATCAGATGGTCTCTTGGTTTGCATGGAACATGGAGGCTGATGGATTATGAAGTCTCCAAGGCTGAGATAATGTGAAATATctcttcagtttctttttttttttttccaaagtatGGCTTCAACCCAACCATACTGGGACCAGTATGATGATATGAACAGCATGTACTTTTCTTTCGGAGCTGACTACACAgtgaaaacacatcagcaaGGCTTGACCTCTGTGGGCTTTGAAAGGAAGATGTTTGGCTCAAGTTTCTCCCACAACTCTAGCCACCACTGTCAGCCTTTAAAGCCTGCTGATCCTGCACAGCTACTCCTCTCCTCCCTGCACAGCTCGCCTGAAGGAGACCAGGTCGTTCCCTCCTTCCAGAAACTCTCTGTCTATGAACAAGCGCCCCCATATTCTCCTAGGAGAAGCTCTAaacctcttcctcctctcccgGACATGGGGGATATGTCTTCTGATGAAGCAGCAGACAGCGAAGTGGAGTTCTTCTCCAGCACCAGCGAGAGCCAGCTACTGATACCAGAATGTGCCTCTAAAACATCAGCCTTCCAATACAGAGCGCAGAATAGGCGGAGTTTCCGGGGTTGCGGGCAGATCAACTATGCGTACTGTGATGCTATGCAGGCTATGCAGGAGAATATGATTGGACAGAAATGTGAGAGGGAACAAGTGGTGCTTAGAGATAGGGACAGCCTTAAACAAGAAAAGCCCCAGCGCAGGCTGCGCCGCTCCAACTCGGGACCTGCGGCGTCTTTTAAACCTACTAACCTCCGAAATATCCACACACAGGAGAAGCCTGAGGTCCCTCCTCGCGCTCCTATTCCGTCCCGTCCTCAAAAGAGTGCCGACCATCAAGGTACTGAAGAGCCTCCCGAGATCCCACCCAGACGGCCAATATACTACGTGGCCCCACGCACTCCTAGTCCTAAAAGCCTCCCCATTTACGTCAATGGAGTGATGCCTCCTACACAAAGCTTCGCCCCCAATCCCAAGTACGTGAGTAAAACCCAGGGCAAGCCAAAGTGTGAAGGATTGCCTGCTTCACATACACCATGTATACTGCCCATCATGGAAGATGGAAAGAAGGCCAGTGCTACACATTACTTCCTTCTTCCACAGCGGCCAGGATACTTGGACAGATTTGAAAGATTTTTCAAAGAATCTGATTCCGAAGTTGTGCAAAGTGGATGTTAAGTATAAGCAGGGTTGTTAGGCTAACTACAAATGTACTTACTTACAGTATTCAGGTGCTTATTGATTTACTCATTGCTACGCAGTCCCACCTCAACTTGAACCCAGAGTACTGATAAGAGGCCAGGTCATAAATGCTGGACATAGTGgagccgttttttttttttttttttgatcatgcATTGTCATTAtgatttacatgttattttatttctcctgctTTGAGTATTCCTTTTTGAAACATTTAACATCTTTGTTTTTTGATGGTTTACATGTAACACTGGTTAGTATAAGCTGgtcttatactgtatgttgggGAAGGACTGGATTCCAGCAcattctggtgtttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920105.2 True 1762 mRNA 0.45 4 10181492 10189088

Neighbor

gene id symbol gene type direction distance location
zgc:154075 zgc:154075,LOC108276260,LOC108434639,LOC108412762,LOC107593441 coding upstream 16829 10152321 ~ 10164663 (+)
her12 LOC108275589 coding upstream 125397 10054823 ~ 10056095 (+)
LOC113530826 LOC108275587,LOC108275676,LOC108275637 coding upstream 138189 10041768 ~ 10043303 (+)
LOC113530819 LOC108275587,LOC108275676,LOC108275637 coding upstream 148790 10031320 ~ 10032702 (+)
rnf207b rnf207,LOC108434591,LOC107593377 coding upstream 165509 10003686 ~ 10015983 (+)
pax7b pax7b,pax7a,pax7,LOC108275561,LOC107672046,LOC107593389,LOC107687391,LOC107565832,LOC102296763,LOC106964226 coding downstream 11956 10201044 ~ 10245845 (+)
znf362b znf362b,LOC108276192,LOC108434701,LOC103043470,LOC107737708,LOC107565834,LOC107593390 coding downstream 233843 10422931 ~ 10437657 (+)
taf13 taf13,LOC107671955 coding downstream 428838 10617926 ~ 10618814 (+)
si:rp71-17i16.5 LOC108276435 coding downstream 449678 10638766 ~ 10651923 (+)
si:rp71-17i16.6 NA coding downstream 470080 10659168 ~ 10663619 (+)
G252422 NA non-coding upstream 14701 10166549 ~ 10166791 (+)
G252389 NA non-coding upstream 16237 10164708 ~ 10165255 (+)
G252336 NA non-coding upstream 180044 9998684 ~ 10001448 (+)
LOC117599238 LOC108275881 non-coding upstream 234560 9944562 ~ 9946932 (+)
G252116 NA non-coding upstream 451437 9708095 ~ 9730055 (+)
G252674 NA non-coding downstream 351359 10540447 ~ 10540656 (+)
G252675 NA non-coding downstream 352182 10541270 ~ 10541479 (+)
G252665 NA non-coding downstream 431561 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding downstream 435764 10624852 ~ 10628804 (+)
G252720 NA non-coding downstream 466719 10655807 ~ 10656025 (+)
LOC113530359 rnf223 other upstream 1554467 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 1735887 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 1799309 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 1843426 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 1925344 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 81715 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 583583 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 654523 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 682941 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 1042290 11231378 ~ 11237367 (+)

Expression


Co-expression Network