ccnq (fam58a,LOC107699584,LOC107671950,LOC107737713)


Basic Information

Item Value
gene id ccnq
gene name fam58a,LOC107699584,LOC107671950,LOC107737713
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10857643 ~ 10865184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920138.2
TTTTCTCCTACGTAGGGGAGGGTTTCTGACTTGATACTATCAGTAATAGTAATTTAAGAAACCGGTGTTTTTGCTCAGTAGCTACTGCATTTTCTTGTGGTTAAAGTTGATGGGATATCATATCTTCCTGCCCATACTAAGAGCTCAGGACTTCTGATTAACCACTACTCAAGCTAGCAAGCTCCATCAGCTTCCCTCAGACTTCCATCCAGACGAATAATGTAGTTAGTGAAATAAACGTGCTCCTTTGTCCTGTATAGATCCAGGTTCTGTGTCCAGCTAGTCATGCAAGCGTCCCGCTCTGCACACGTGGCCGGCATGGAGAATAACAGTACAGCTGCAGGAGACTCCAGTAATGAAACCAAAACACACTTCCGGGTGTGTCGCTTCATCATCGAGACGGGAGTGAAGTTGGGTATGCGGTCTGTTCCTGTAGCCACCGCATGTTCACTCTACCACAAGTTCTTCCAGACTGCCAGTTTACAGGTCTACGAGCCATACTTAGTGGCCATGTCCTGCATTTACCTTTCGGGCAAAGTTGAAGAACAGCATCTCAGGACAAGAGACATTATCAATGTCTGTCACAGATATTTCCGCCCAGGAAGTGATCCACTGGAGCTGGATGAGAAGTTCTGGGAGCTGCGAGatagtgtggtacagtgtgaaCTCCTCATTCTCAGACAGCTCAACTTCCATGTGTCTTTTGAGCATCCTCATAAGTACCTTCTGCACTACCTACTGTCCGTGCGGAGTTTGCTGAACCGTCACGCTTGGGCTCGGACCCCCATTGCTGAAACAGCCTGGGCCCTGCTCAAAGACAGTTACCATGGACCGGTGTGTGTGCGCCATCAGCCTCAGCACCTCGCACTAACAGCACTCTACCTTGCTCTGCACACTTACGGAGTCCAGGTACCTGCAGGAGAAAGGGAGTGGTGGCAGGTTCTGTGTGAGGACATTACCAAAGCCCAGATTGAGGCCATAATGACTGAACTGCTGCAGCTCTATGACATGGAAGCCAAATGTACCTGAGAGGGAACAGATTGTGAAACAGGCCATGTAAAGCAGACTACAGCATAGTCTAGAGTCCTTTTTTTCCCAGAACCATCCCATCACCACCTCCCCTGAGACCAGAGAAAGTCTGGATCATGGACCAAATTCCAGAAATAGTTTTTTCCTTGATTATTTGGTGATCTGAAATTATACAGCTGGATTTTTTCACAGCTAAGGAAGTTGTCAAAGTGCCAATGCCCACACTAATATGAGGTAGGGTAATGAGGACTGAGAGTGTGAGTCACCAGGTGACAGTCAGAAAAACAGGCTTTGGCCACAGCACATCAATCAGTTTCCAAGCTCATGCCCtactttcttttcctccctTGTTCCAGTTTCTCTGGGAAGggaagagagagtgtgagaaaaaaggggaaagtgtgagggggaaaaaagaattaaagaagAAATCTAACTATCCTAGGAGCTAGTCTTTACTGGAGGTAAAGCAACCAAATCTGGGGCACTGCTTTGATATGCTataatttaattacacactTTCTCTGCCATTAAAACCTATCCCTATGGTTCCCTGAagttatattacagtatattatatgaCACTGTAAATTGTGATTGAGTAAGACAATTGTGATTTGAGTTTTGTTCACTCAACTGTTAaggtattttaaaaacaaaatgttataaaagtGGAAAAATCCATACCTTTTTGGTTACTTTGGTACGTGTCTCTTTTTCGTGACTCTGATATAGTATTAGTGTCACATGCACCATTTCACTCGAGAGCTTTTACTGTGCTATCAGGTTATTACAGCATGCACAAGCATGCTTGTCCCACAtcagaggaaaaataaatgaagcgaAAGCCAAACTGGGTAATAAGTTAGTATTGAATGAAATCAGTACATTTTAATGTGTATTATCATTCTTAAAGCTGTTGAAACATGATGGAGAAAATTAAAACCTTA

Function

symbol description
fam58a cyclin-Q

NR:

description
cyclin-related protein FAM58A

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23964 CCNQ, FAM58A; cyclin-Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920138.2 True 1979 mRNA 0.44 5 10857643 10865184

Neighbor

gene id symbol gene type direction distance location
bgnb bgn,LOC107712721,LOC105006929,LOC107699588,LOC107672034 coding upstream 16450 10824171 ~ 10841193 (+)
si:dkey-32e6.6 LOC108276052 coding upstream 41609 10802060 ~ 10816034 (+)
tktb tktb,LOC108276051,LOC108410447,LOC103046877 coding upstream 62033 10786494 ~ 10795610 (+)
lrrc23 lrrc23 coding upstream 72685 10780232 ~ 10784958 (+)
usp19 usp19 coding upstream 87260 10745808 ~ 10770383 (+)
haus7 haus7 coding downstream 53091 10918275 ~ 10927209 (+)
si:dkey-93l1.9 NA coding downstream 65063 10930247 ~ 10931966 (+)
rpl10 rl10,rpl10 coding downstream 129693 10994877 ~ 10997433 (+)
LOC113530991 NA coding downstream 131425 10996609 ~ 10996743 (+)
LOC113530834 NA coding downstream 139652 11004836 ~ 11006641 (+)
G252732 NA non-coding upstream 91536 10765126 ~ 10766107 (+)
G252720 NA non-coding upstream 201618 10655807 ~ 10656025 (+)
G252665 NA non-coding upstream 224224 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding upstream 228839 10624852 ~ 10628804 (+)
G252675 NA non-coding upstream 316164 10541270 ~ 10541479 (+)
G252893 NA non-coding downstream 79896 10945080 ~ 10946913 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding downstream 84485 10949669 ~ 10961642 (+)
G252955 NA non-coding downstream 132897 10998081 ~ 10999820 (+)
G252966 NA non-coding downstream 173034 11038218 ~ 11039431 (+)
G252996 NA non-coding downstream 238955 11104139 ~ 11104527 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 5115 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 77783 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 515215 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2230618 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 2412038 8437864 ~ 8445605 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 6845 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 366194 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 527250 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 604867 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 618235 11483419 ~ 11507750 (+)

Expression


Co-expression Network