slc16a7 (LOC108276076,LOC108429289)


Basic Information

Item Value
gene id slc16a7
gene name LOC108276076,LOC108429289
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14840288 ~ 14847015 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920159.2
TTGTGGATGAATCTGCCACTACCTTTTTTGGAATTGTGTCCATGTTGcattattttggagaaaattccGTTTGTTTATACGTGTAGTAGATGAGTTTTCCTGATCGGCGTGATGACGTTTAATGTCCCCGACACCGTCTTTAGTCCCATTTAGCCACTTTTTAGCAACCACCTTTTTCAAGACACGTGAAAAGCTTAAAAAATCATGAGTGGGGTGTTGcttgtgtattttatgtcatagaATAAAACGTGAAAATATTTTGAGCTTGTGTTAATCACAGAACTTATTTCAGGCATTTAACCAAAAACCCATTCAAAAAACCCATTGAGTTGTGGACAATGGGACCGGAAGTGCGAAAATGCGAACTAATTTCCGGGTTTTAGGACTCATTAGGACTTTATTTACCTTTTGTAATTGTAGGCATGCTGAATTAGTTAAAAATCAGCCAGCAACAAGGGAGAGGTGGAAGTGCAGGAGCTGATAAGGTCTGGTGGTGGGGAGAGAGCGCGTGTGAGAGGCAGGACAGGTGAACTGTCTCAACTCCACACACAGTCCCCACAATGCCCCCCGCAGCTGCAGCTGATCTAGGCTACACTCCTCCTGATGGAGGTTGGGGCTGGGCAGTGGTTTTTGGATCATTCGTGTCCATCGGCTTTTCATATGCCTTCCCCAAATCCCTTACCATCTACTTCAAGGAAATCCAGGAGTATTTCTCCATCTCCTACAGTGAGATTGCATGGGTCTCTTCCATCATGCTTGCTACCATGTATGCTGCAGGACCGTTGAGCAGCATACTCGTCAATCGTTATGGGAGCAGGCCGGTGGTCATTACTGGTGGCCTAATGGCTGGGGTCTCCATGATTGCTGCTTCTTTTGGCACAAGCATCATACATCTGTACATATGTGTAGGAGTCATTGGAGgtcttgGCCTTGCCTTTAATCTGCAGCCAGCCCTGACCATTATTGGGAAATACTTCCTTGTGAGACGACCCATAGCAAATGGTTTGGCCATGGCAGGAAGTCCAGTATTTTTGTCCACTCTGGCTCCACTCAACCAGTTTCTGTTTGACAACTTTGGCTGGCAAGGAAGTTTCTTCATCTTGGGAGCCATACTATTCAACTGCTGTGTGGCAGGAGCACTGATGAGGCCCATTAAGATAAGAAAAAAGCCTTCGAAAAATCAAAACAGTGATGGCAATGGAGCAGGAACAGAGAATAGTGATTCCCAGAAAGTTAGTTTAGTGAAAGGAAAGCAACAGACAAAGCAGACAGGATGTGCATCAAATGTGAACAAATTCATTGACCTCTCACTCTTCAAGCACCGTGGTTACCTTATATACCTGGTGGGGAATGTTGTGATGTTCTTTGGGTTCTTTGCTCCAGTCGTGTTCTTGGCGCCCTATGCCAAGCACCAGGGGATTGATGAGTATTCTGCAGCCTTCCTGCTCTCCATATTTGCCCTGGTAGACATGGTGGCTCGGCCTACGACTGGCCTAGTGGCCAACACAAAATGGATCCGTCCCAGGATTCAATACTTCTTCAGCTTTTCTGTGGCATATAATGGGGTGTGTCATCTGGCATGCCCTCTGTTGCCCGGGTATGCAGGTCTGGTGGTATATGCAGTCTTCTTTGGGATGGCGTTTGGAATGCTGTGTGCACTGCTTTTTGAGGTGCTAATGGATTTGGTGGGAGCACAACGATTCTCCAGTGCAGTTGGACTTGCCACTATTATAGAATGTGCCCCTGTTCTTCTTGGGCCCCCAATTTCCGGTGCACTGGTTGATATCTTCATGGACTATAAGTACATGTACTTTGCATGTGGCATAATGATGCTGATTCCTGGACTTTTCCTCttcattatgaatttttttaactaCAGATGGTTGGAGCAGGAacagcagaagcagaagcaggaTGATCTGCAGATTGGTTCAGCCAAAGAACTTGCTGCTATAGAGGAGGCTAATGATATTGAGCAAGACATCAAATTCAGTCAGGAAGAATAATTTATGGACTTTGCTAGCAAAGAAGCGTAATGCTATGCACTTAGATTTTAAGTTGAAAAAGCGTACATCCATATATTTAGTTAAAAATAGGGTATTGTTATATACCCTATAATGCTGCATAAGATTagtattacatttatatttgtcaTGGACCAATCATCCCTGAGTGTTACACCTAAAGTCTTACTGTTTAAACTCTCCACTTACTCAGTGTGAAACCTTGCTCCTTACCATGAGCTTATCTTTCACACTTCTGTCCTAGCTTTTTACCATATTAACAGTGTGTATTTAGGGCCCAAGCACTGAAAGTGTGCAGGGCTCTATTGTTTTCCTAAggattattatttctattataattattttttcgGGGTTACGGGGGCTAAggattattatttctattatgattattttttcgGGGTTTCGGGGGCTTTTGGGGCCTTTAACATGCTCAAAAACTCATGAAATCTGGCACACATGTCAGACTCTACTACCATTAGGCCCTGGCAAAGGGTAGCGCATGGCGTGGGGGGGTCTCTGCAGCGCCCCCTTTTACACAGTACATAATCTTGGTGCATATTTCGTACGTACTTGTACGTATATGTATGAAACTAAGTACATAAATTGTTCTCATCTACCCGAACAACTTTCGTGCTGAAAATCATTAGCTCCGCCCAACAGGAAGTtggccattttggattttgtgaaagtgcttgtggtgaacttttaaatactcctcctaGGGAGATTCACATGATTGTCACCAAACTTGGTCAACATTATGCCAAGACATTGACTATTTTGAGTCATGGTCATAGTGCCACCAACTGGCAGCAACAAACTTACAACGGACTATGCAATAATCCTCTTATATTTACCCGAATCGCCCCAGTCTTGGTCAGAATAATGTCAATACATGGCTGATGTAAAACTGTGAAAGGATTTTTGATGTCTTAGTGTTGTCGTGGTATCGCATCAAACATTAATACTCTTTTGGGGTGTTTTTGAGGTTCTTAGCatgcttaaaatttcattaaagtCGGCACACAGGTCAGAGTTAGCGTTAGACGACCGTTAGGCGTGGGCGAAAGCTAAGTTATGGGTGTGGAGGGGGGCTCTGTAGCGATCCCTTTTGACTAAAGTGGTGGGGTCAGTTTCACACACAGTTACTAAACTCTGTACATATATTGTTCTCATTAAGCCAGACAACTTTCCAACTGACAGTCTTTAGCTCCGCCCAACAGGAAGTaggtcattttggatttaatgtggattttttgaaatgcagtctttttttttgaaaagacaTCATCTACTATATAgctataattacatttaatctttGCATAGCTGTTACGTTGTAATtcaaaatgaatcaaatcaCAAACTAGGAGAAACGCACATAAACAGAGCTATGTTGCACCCCTTTAAATTCATGTGACCACTACATATTACTtcactacaattaattaatggctaacattaattattatgtttattataatttttttaaataattttttttattaatatttattataaaattaaggATAACAACATATGTCTCTTATCTTCTTCATGCATTGTTTAAGCTGTGTATAAGCTGTATGTTTGGACATGGAACCTGTTGTAAAGCCTTAGACCTGGGCTTAACCTAACACATCAGTGCAAAACAAGTAACTCTACAGCGCTCGCTTCACTATGAATTGTTTTTGTACACCCACCGGGTGGCGATGGCATCTTATTGCTTGGGCCCGtcatcgctgcttgcagctatatttgttttgttgctcCTATCTGTTGTCCTTGCCTTTTGATCTtctgtttctgatttttttgttgcattaaaCCTCTTGCGTAAGTGTTCTACTTGTA

Function

NR:

description
PREDICTED: monocarboxylate transporter 2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920159.2 True 3878 mRNA 0.42 5 14840288 14847015

Neighbor

gene id symbol gene type direction distance location
zgc:171775 LOC108276094,LOC108429287,LOC103042110,LOC107705698,LOC107666627,LOC107559857,LOC107551519,LOC107727002 coding downstream 91693 14741169 ~ 14748595 (-)
LOC113530599 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050 coding downstream 166322 14669816 ~ 14673966 (-)
eif4ba eif4b,eif4ba,LOC107666323 coding downstream 193983 14624061 ~ 14646305 (-)
tns2a tns2,LOC107681375 coding downstream 225633 14573892 ~ 14614655 (-)
ppp4r2a ppp4r2,LOC108276138,LOC107551500 coding downstream 356181 14475675 ~ 14484107 (-)
adrm1 adrm1,LOC106534082,LOC103354471,LOC105894265,LOC107727009,LOC108276396 coding upstream 126001 14973016 ~ 14979288 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding upstream 134331 14981346 ~ 15002677 (-)
acss2 acss2,LOC108438110,LOC107666475 coding upstream 246782 15093797 ~ 15116626 (-)
gss gss,LOC107594436 coding upstream 278332 15125347 ~ 15140979 (-)
si:rp71-79p20.2 LOC108275774 coding upstream 340383 15187398 ~ 15257751 (-)
G255020 NA non-coding downstream 307700 14530825 ~ 14532588 (-)
G254567 NA non-coding downstream 1139883 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 1143668 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 1174815 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 1225625 13614428 ~ 13614663 (-)
G255306 NA non-coding upstream 28629 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 333371 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 335142 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 485111 15332126 ~ 15332451 (-)
G255506 NA non-coding upstream 607118 15454133 ~ 15454354 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 136018 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 689707 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 1556403 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1905980 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 2672493 12155728 ~ 12167795 (-)
LOC113530775 NA other upstream 411470 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 811321 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1800808 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 1940786 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 2005913 16852928 ~ 16871164 (-)

Expression


Co-expression Network