mfsd4ab (mfsd4a)


Basic Information

Item Value
gene id mfsd4ab
gene name mfsd4a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11761199 ~ 11767193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920168.2
CTTGAGCAAAGACAGTGTGAACAGGAAATCCGCAGAATCTTCAAAAACCCTGACGTtcaataattcattcattctgagGACAGCATGTTTGTTAAGGAGCGTCTTATTACACTTTTCAAACAGAACTGGCAGCACACACTGACATATTGGAGTGTGTTCTTTAGTTTTGGACTCTGTATAGCATTCCTGGGGCCGACTATATTAGATTTGAAATGTCAGACCAACTCAACGCTACAGGAGATCACTTGGGTTTTCTTCTCGCAGCAGGTCTGTCTACTTATTGGCAGTTCGATTGGCGGTGTTTTCAAGAAAACgTTGCTCAGTGCCCTCTCTGCTCTCTTCCTGTCCTCTCTCCTCATTTCTCTGATCTTTGCCATCATTCCTCTCTGCTACAATGTGCTGCAATTAGCCATAGCCATGGCTGTGTCAGGACTGGCGATGGGTATCATTGATACAATTGCAAACATTCAGCTGGTGGTTCTTTACCAGAAAGACTCTGCAATCTTCCTACAGGCATTGCACTTCTTCATTGGCTTTGGTGCTCTGGTGAGCCCCCTGATCGCAGATCCTTTCCTGTCGGAGCACTGTCCCAGTATGAACAGCACAGAGGATGAGGCAATAATGCACCACTTCAGACACAGTCTGGCAGGACTCAGGAGTCCAATACTTCTCAACCACTCCGAGCACTCTGAAGGCGTCGTAGAGCAGTCCAATGTGTCCTATGCTTTCTGGATCATGGCTCTGATTAACCTGCCAGTACCCATTGCAGTGCTTGTGCTAATGTACTTCGAGAAACTGATCCCATGTTGCCCGAATGGCTCTCCACGTCTTCTGGACAAAGATGAGCTGGCCATGGAGAGCAACACAACTGAGTGCGCAGAGGCACAAGAGCAAGAAGCTGGAGGCCATGGAGACCTTTTTAGCTGCTGTATGAATAGTAACCTGCGTGAGCTTCCTGCCTCGTTCTTTGGAGTCCATATTCTGGGAGGACTGGTCCTCTTCATGACTGATGGCATTGTGGGCGCCTATGCTGGTTTTGCGTACACGTATGCTGTGTCGGCTCCAATGTCACTGGATGCTAAAACAGCTGGCTATTTACCCTGTATCTTCTGGGCTGCTATCACTGGAGGAAGATTGATGTCCATTCCACTGGCCTATCGTTTCAGACCAGTGTACCTGCTCACGTTTAGCCTGGCTGGTGTAATAGTGACGGTATTGCTACTGCTGATTTTCTACACTAGTAGCATATTCCTGTTCGTTGGGACATGTTTACTTGGGCTTTTCCTCAGCAGCATCTTTCCATGCATGCTTGCTTACACTGAGGACATTCTAAACTACCAGGGATGTGCCACCACTGTCATAGTGACCAGTGCTGGAATGGGTGAAATGGTCCTCCAGGTTGTGGTTGGATCGATCATTCAGACAGAAGGCAGCTATAGTTTCCTCCTCTGTGGCATGATCGCTGGCTGCGTTGGATTTGCTCTCTTCTTTGGCCTCATGCTGTGTCACTACTTCCACAGAAACTACCTCAGAGGAACATCTAAAAAGACAGCTATGGTGGAGCAGCCAGAACCTGTGGTGGCTACATGTGAAGCtccagagagagaagaggagaaagcAGAAGAGAAAACAGATGAGAAAATAAGGGAGAAAATAGAGatgaaaacagagaagaaaaatgaagaaagccAATAGTCTCTATTATTGTAGATTTGAGTAACCTGGTCCAAACTAATCTATAAATATGAAACTGCTGAAACTACTGGGAACATACAGTACTTCATCATCGAGTAGTAGTTCAGAGTAAGTACGCTACTGGGTCAGAGTGATATCTTCAAATGTAATGTTATGATCCAGGAGTTTTCTCGTAGTATGGCATCAAAGTTTAACCTTTCAATATGCCTGcataataatgaaaacataGTCTTCTCAGTTACAAGCTAATGGCTAAACCTGTTTTCAGGAAATCTAATTTTGCTAAGTATTACAGGAAGACACTGGGAAGAGATGGAATAAACAATTATGGTGACCATAGGACATGCTTGTTCATAGACTCTCAGTGATTTTTGTCCAGTGAAAAAGCAGGAGTATCTTAAGATGCAAATCTGATGCAAATCTGATTTATACTAGGGGCAATAGGCAAAAGTCAATAGAGTTGGATCATGTTTCCACTATATTGTATGTGCTATGTAGTCCAATCTATCACCCAGTCCACTGTTCTTTCAgaattatttatcttatttattggtgtgaaatgtattttgtaaaatatatctGAGGAGTTTCTTGGTAGTGAATCTGGCTGCATATTGTCTCTAAAAGCTTGATGAATGTGGGCCTGTTATTCCATTGCAGCCACTTCAGAAACTGTTGCATTATCCTTTTGCTGGTCTGTAGATACAATACAATGgttttactgtaataaattcttttaaaaGATCTGA

Function

symbol description
mfsd4a Predicted to enable glucose transmembrane transporter activity. Predicted to be involved in glucose transmembrane transport. Predicted to be integral component of membrane.

NR:

description
major facilitator superfamily domain-containing protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920168.2 True 2444 mRNA 0.44 10 11761199 11767193

Neighbor

gene id symbol gene type direction distance location
nucks1b nucks1,LOC108435247,LOC107563650,LOC107737648 coding upstream 3324 11752133 ~ 11757875 (+)
tafa1a fam19a1,fam19a1a,LOC108275576,LOC108436303,LOC107560881,LOC107741340,LOC107657002,LOC107563677 coding upstream 46389 11671398 ~ 11714810 (+)
fam120c fam120c,LOC108436345,LOC107657034,LOC107741318,LOC107672004 coding upstream 140829 11600642 ~ 11620370 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding upstream 219175 11533655 ~ 11542024 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding upstream 227949 11530650 ~ 11533250 (+)
lemd1 NA coding downstream 18677 11785870 ~ 11808702 (+)
pm20d1.2 pm20d1 coding downstream 41798 11808991 ~ 11821760 (+)
tfip11 tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 coding downstream 133205 11900398 ~ 11907918 (+)
bhlhe23 bhlhe23 coding downstream 254463 12021656 ~ 12023438 (+)
dnajc5ab LOC108276181,LOC108435236,LOC107103370 coding downstream 322354 12089547 ~ 12112153 (+)
G253301 NA non-coding upstream 31907 11729040 ~ 11729292 (+)
G253248 NA non-coding upstream 298442 11461714 ~ 11462757 (+)
G253212 NA non-coding upstream 384579 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 388847 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 514337 11245898 ~ 11246862 (+)
G253329 NA non-coding downstream 15715 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 30064 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 171886 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 179139 11946332 ~ 11974544 (+)
LOC113530280 NA non-coding downstream 224447 11991640 ~ 11992121 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other upstream 120292 11594504 ~ 11640907 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other upstream 253449 11483419 ~ 11507750 (+)
zgc:103759 LOC108276081,LOC108436299 other upstream 281823 11470051 ~ 11479376 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 345750 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 523832 11231378 ~ 11237367 (+)
G253367 naca,LOC106571941 other downstream 124957 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 346429 12113622 ~ 12121372 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other downstream 374279 12141472 ~ 12143527 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other downstream 599420 12366613 ~ 12385996 (+)
rbbp8l rbbp8nl other downstream 1069858 12837051 ~ 12854380 (+)

Expression


Co-expression Network