sla2 (sla2)


Basic Information

Item Value
gene id sla2
gene name sla2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13625898 ~ 13632021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920172.2
GCCTCAGTGTGTTTTTCATATCTGAGAACCACAGAAGGATTGACAGTTTCTTAGAGCACATACATCTTTCTACTGCAGGCTTCATCAAACACTGCCTTCAATCGAGGCCTGATCTTCAAGTCACCTTGTTTCTCTCACTTCACACTCTTCTACCAATCAGAAACACAGCTACTCATCGCAGTGCGTGTTCTTGACGTGTCTACAAGGGCAGGAGTGAGTTGtttttgagacttttttttttttggttaaactcAGTCATAAAAGAGCCAAACGGATGATCTGCACCCACTGAGGAGAAACAACTGGTATCACAGCTTGGCAGAGAAATGAGTCTGCAGTTCTGCTGATCAGGAGCATCATGGGCAGCAGGCCAAGTAAAGGGAGGCGTAGCAGTATCCCTCAAACACCCCTGCTGGATTTGGATGAGCCCATGGATGGCAGGTATGTAGTGGTTGCTCTGTATAACTACCCGGCAGGAGGTCCCTCCGATTGCACTATCAGATTTGGGGAGAGACTCAACGTGCTTTCTGAtgaaggCGAGTGGTGGAGAGTGAGTTCCTCAGCTACAGGAGTCGTGAGCTACATCCCCAGCAGCTACACATGTAAAGTGTTTAACAGGTGGCAGTTTGTAGGTCTCAGTAAACAGAAGGCAGAAGAGCTGCTTCTCAGCCCTCAGAATCACCCTGGCTCCTTTCTTGTTAGAGAGAGCCAGACCATACCTGgtgcTCACTCACTCTCAGTGCGACTTGAGCGCCAGTCCATCAAACACTATCGTATCAATACTATAGAGAACGGCTGGCACTACATCTCCCCCCGCCTCACCttccccactctcacacacctcgTCGAGCACTACTctgAAGTGTCTGATGGCCTGTGCTGTTTGCTGAAAGAGCCATGCTTCATTCAAGGCTCCAACAACGTTCCGGTTGTAAGCGGCCCTCCTCCTATATCAGTCAGAAAACCCACCATCAACTGGAAAGATGTCAACAGctccATGATCTTTGGGCCCCAAAAGGAAGGTGTGGAAGAGTCGCTTGTCAGTGAGGGGCTGAAGGAGTCCATTAATTCCTATCTTTACATGACTGAAAATGGAGAATGTAACGAATGTGCTGGAAACTGGGACACGTGAGCTTGCGGGACATttgaaagaaaggagaagagtTAAGGCTGAGGCTGACGGCCAGATTTTACTGTTCCTCAGTTCCCCCTGGGACCTGCTGAGCtttgcactgacacacacagatcactGGAAAGGCTCGGACATGGACAGTACAGGAGTGTAGTAAAGACATCGGTTCAGTAGTAGAGCAGAACATTTGAAAATGAAGCGGCAGCACTTTCCTGCAGTCCATGTCATTCTCTTTTAAGTCATCACTCATCTTCCAGTGTGGGTGATGGAGATTTTAGCGTCACAGATTTCTGTGTGGACTTGTTCCTGAGGATGTGAacgaaaaaagaaagagagaaacagaagtgACCGTGGGAGGCTCAAAGCAGTGCGTGCAGCCATTTGTGCCGCTCAAACACTTCTGGAACTTTCTCAGTTTTCATGGACTAGAGAGAGGCGAGGCCATGATGGGAGACGCGAAACCTTTATTTCttgctgattttttaaaaaaaaggttatattGAACTGTTGgttcttatttaacattttaaaagttaaGAGTACAGTACATCTGTAAATTCACTATGTGCTTTTTGTTGATTGTGTTCCAACACTGCAGTCACATGTTATTTAATGCTGCTTCAAGAAAAAGCTTAAGAAACAA
>XM_026920173.2
GCCTCAGTGTGTTTTTCATATCTGAGAACCACAGAAGGATTGACAGTTTCTTAGAGCACATACATCTTTCTACTGCAGGCTTCATCAAACACTGCCTTCAATCGAGGCCTGATCTTCAAGTCACCTTGTTTCTCTCACTTCACACTCTTCTACCAATCAGAAACACAGCTACTCATCGCAGTGCGTGTTCTTGACGTGTCTACAAGGGCAGGAGTGAGTTGtttttgagacttttttttttttggttaaactcAGTCATAAAAGAGCCAAACGGATGATCTGCACCCACTGAGGAGAAACAACTGGTATCACAGCTTGGCAGAGAAATGAGTCTGCAGTTCTGCTGATCAGGAGCATCATGGGCAGCAGGCCAAGTAAAGGGAGGCGTAGCAGTATCCCTCAAACACCCCTGCTGGATTTGGATGAGCCCATGGATGGCAGGTATGTAGTGGTTGCTCTGTATAACTACCCGGCAGGAGGTCCCTCCGATTGCACTATCAGATTTGGGGAGAGACTCAACGTGCTTTCTGAtgaaggCGAGTGGTGGAGAGTGAGTTCCTCAGCTACAGGAGTCGTGAGCTACATCCCCAGCAGCTACACATGTAAAGTGTTTAACAGGTGGCAGTTTGTAGGTCTCAGTAAACAGAAGGCAGAAGAGCTGCTTCTCAGCCCTCAGAATCACCCTGGCTCCTTTCTTGTTAGAGAGAGCCAGACCATACCTGgtgcTCACTCACTCTCAGTGCGACTTGAGCGCCAGTCCATCAAACACTATCGTATCAATACTATAGAGAACGGCTGGCACTACATCTCCCCCCGCCTCACCttccccactctcacacacctcgTCGAGCACTACTctgTGTCTGATGGCCTGTGCTGTTTGCTGAAAGAGCCATGCTTCATTCAAGGCTCCAACAACGTTCCGGTTGTAAGCGGCCCTCCTCCTATATCAGTCAGAAAACCCACCATCAACTGGAAAGATGTCAACAGctccATGATCTTTGGGCCCCAAAAGGAAGGTGTGGAAGAGTCGCTTGTCAGTGAGGGGCTGAAGGAGTCCATTAATTCCTATCTTTACATGACTGAAAATGGAGAATGTAACGAATGTGCTGGAAACTGGGACACGTGAGCTTGCGGGACATttgaaagaaaggagaagagtTAAGGCTGAGGCTGACGGCCAGATTTTACTGTTCCTCAGTTCCCCCTGGGACCTGCTGAGCtttgcactgacacacacagatcactGGAAAGGCTCGGACATGGACAGTACAGGAGTGTAGTAAAGACATCGGTTCAGTAGTAGAGCAGAACATTTGAAAATGAAGCGGCAGCACTTTCCTGCAGTCCATGTCATTCTCTTTTAAGTCATCACTCATCTTCCAGTGTGGGTGATGGAGATTTTAGCGTCACAGATTTCTGTGTGGACTTGTTCCTGAGGATGTGAacgaaaaaagaaagagagaaacagaagtgACCGTGGGAGGCTCAAAGCAGTGCGTGCAGCCATTTGTGCCGCTCAAACACTTCTGGAACTTTCTCAGTTTTCATGGACTAGAGAGAGGCGAGGCCATGATGGGAGACGCGAAACCTTTATTTCttgctgattttttaaaaaaaaggttatattGAACTGTTGgttcttatttaacattttaaaagttaaGAGTACAGTACATCTGTAAATTCACTATGTGCTTTTTGTTGATTGTGTTCCAACACTGCAGTCACATGTTATTTAATGCTGCTTCAAGAAAAAGCTTAAGAAACAA

Function

symbol description
sla2 Enables protein N-terminus binding activity and signaling adaptor activity. Involved in negative regulation of T cell receptor signaling pathway; negative regulation of calcium-mediated signaling; and negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
PREDICTED: src-like-adapter 2 isoform X1

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920172.2 True 1775 mRNA 0.46 8 13625898 13632021
XM_026920173.2 False 1772 mRNA 0.47 8 13625898 13632021

Neighbor

gene id symbol gene type direction distance location
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding downstream 174524 13440784 ~ 13451374 (-)
myt1b myt1 coding downstream 597011 12995420 ~ 13028887 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding downstream 638761 12975444 ~ 12987137 (-)
slco4a1 slco4a1 coding downstream 971077 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 1053390 12545673 ~ 12572508 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 3791 13635812 ~ 13699042 (-)
phf20b phf20,LOC107594424 coding upstream 68415 13700436 ~ 13721730 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding upstream 101067 13733088 ~ 13813355 (-)
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding upstream 182817 13814838 ~ 13947569 (-)
eef1a2 eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560 coding upstream 403779 14035800 ~ 14042467 (-)
G254587 NA non-coding downstream 11235 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 34928 13590500 ~ 13590970 (-)
G254270 NA non-coding downstream 137405 13428290 ~ 13488493 (-)
LOC117599295 NA non-coding downstream 160683 13464191 ~ 13465215 (-)
LOC113530405 NA non-coding downstream 423267 13201019 ~ 13202631 (-)
G254599 NA non-coding upstream 32872 13664893 ~ 13665473 (-)
G254600 NA non-coding upstream 60776 13692797 ~ 13696620 (-)
G254567 NA non-coding upstream 67988 13700009 ~ 13700405 (-)
G255020 NA non-coding upstream 898804 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 1243623 14875644 ~ 14878506 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 342013 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 691590 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1458103 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1766552 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 2057295 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 496942 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1067251 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1626464 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 2026315 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 3015802 16647823 ~ 16695031 (-)

Expression


Co-expression Network