si:dkey-21c19.3 (LOC108275992,LOC107737512,LOC106572650)


Basic Information

Item Value
gene id si:dkey-21c19.3
gene name LOC108275992,LOC107737512,LOC106572650
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19119031 ~ 19127613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920188.2
GCTTTCGGCCATGTTGTGGTTTTAAATGAGGAAGAAGCGGGAGAGGTTATCGTGCAAAATAAGTTTATGTGCGCTTTTTCATTCAGACTATTTCTTCCGGCTTTCaactcagttaaaaaaaattagccacAAATACTGACACACGCAGAAGACTGTTTTGGGGTAGTTGAGATAGACGAAATATATCTGTTCGTCACTTATCGCTAGTATTAGCATCGCAAGCTaagtagctagttagctaggtaGTTGTCGAGGGGTTAAGCTTGGcttaggttagctagctagctaggtgcGTTTACTGGAAATGGGGATTAGGCTAGTCAGCTAACAAAGCTAGTTAGCATGTGGTAACTCTGGCTACTAGCATGCGCACGGCGGGCGGGAGTTACACGAATGCAGGAGCTCGTTGACGTTAAATGTAATTTGACTTGTGTGGCTTTAGGAGTTTCCTCTAACGAGCTTCAACATGTTCAATAAATTCTACGAATGGATTGAAAGTGGAATAGCAACTCTGCGCAATGGAGTGCCGGCTGCTGGAGATCCATCCGACACCGTCCGAGTTCAACAAGACGCTCCTTCACAGAGGAAAAGACCATTACAGAGtttgGAAGATGGGGATGCCATTAATCATGAAGAGGACAGAGCTGTTAAGAAGTTTAGAATGGGAGATATTATGGACACAGTGAAGAATGCTGCTGAAGGGATGAAGACCCATGGCTCCACTGTTGCTTTGTGGATGCGCAACAGCGTTAGTCCAACCTTGAGGAACATGCTACCTGCTTCCCCTGGCCCACCTCAAACTCACATACCATCACCTGATGCAGCCAATTCATCGGGATCTGTCTGGACTGAAAGCAAGTTAATTGAAAGACCACATGAAACGCACAAGGACACATTCGTTGCTCCAGTAACAGCTTTTGAATGGAAGACTATCATTAAATCAGACTCTTTAAGAACCGAGCAGTCAGTGACTATATCGAAGGTCAGCAGACGACATGTACACACAAGCCTTCCACTCCATGAGACGCACAAAACCAATGGCCACCCAGTTACTACCTGCACTTCTAAACCTTGCCCATCTCCACGACTCGGCCGTCCTATTTACATCAGAGCACAAAGATCACCAAgTCGATTTTCGACACCTGGGCCAAGCACAGGGAGCACGTCTTACACCAGCATGTATGAGAAAACCTTTCCCATTCGAGTAGTGCAGAATCCTTCCCCCGGCTCCTCCGGCCGTCACTGGAGAGGCAGAACTCACTGCACAGCACAAGAGTCAGTACgtgaggaggagaaggaggtgtACAGGCGGTTACTAGCCATGGTGTCCGGCGGCCAGTCATCATTCTTCCATGACAGCACTTCTAACCCAGGGATCCGATCACATCGGGATTTTTCCAGTTTCCTGACTTCGAATCGCAGGCTGCTGCAGTGTGCCTCGCCAGAAGGCTCAGGAGCGGGAGAGTCCTCTCTCGGTTTATCCAGCCTGTCTCCTAGTCCCCAGACCTCGAGCGCAATGCACAGCCCTTCTGCACTCTCCAACGGGCCTGAAACACAGTCCTGGGATCCTGATTCAGATGGCAAATACGTCGCAAGAAAAACAGTGTTAGCCGAGCGGTCAGTGCCCTCCCCGGCGGCTCTTCAAGATACTTCTTCTCAGGACACACAGTCTTCTGGTGTGCACTCTGCTCATGATGGGGATTCTGTCATTTTTGTAAAGGAGCAACATGGCAAGAGACCAGAGGGCTCCAGCGTACCATGTTTCCAAGCCGAGCTGTGGATCAAAGAACTGACAAGCCTTTATGACGCCCGTGCTCGGGAGAGACGGAGGCTAATAGAGAAGCAAGAGGCTCTGGCATCTCAGCTTCAGCATCAGCGCCTTTCCGGCGAGGGTAGAGCTGATTTAAGAAGTGTGGAGCTGCGGGTGCGAGTCCCTCTAGAAAAGGAGGTTCCTGTGACGCCTGTTGTCGAGGAAGCAGAGCCTGAAGCAGAGGAACAGGAATTCCCTGAGTTGACAGAGGCCATGCAAAATGAGGTGAACCGGGCACTAAGAGGTGGAAGTCAGGACGACGTGCTCAGTGAGGGATTCCGCCTTACCATCACCAGGAAGGACCTGCAGACCCTCAGCCACCTCAACTGGCTCAACGATGAGGTGATAAACTTCTACATGAACATGCTGGTGGAGCGGAGCAAGTCACCCCACCTGCCCTCTGTCTACACCTtcaacacttttttctttcccaaGCTGCGCAGCTCAGGATACTCAACTGTACGGCGCTGGACCAAGAAGGTGGACATCTTCTCTGTGGACATTATCTTGGTGCCCGTCCACCTAGGAGTGCACTGGTGTCTCGCTGTAGTGGATTTCCGCAAAAAGACCATCACGTATTTTGATTCCATGGGCGGGAACAATGACGAGGCGTGTCGGATTTTGCTAAATTATTTGAAGCAAGAAAGTGAAGACAAAAAGAAGCAAGAATTTGATACCTCAGACTGGATCCTTCATAGTAAAAAACGCAACGAGATTCCTCAGCAAATGAATGGCAGCGACTGTGGGATGTTTACATGCAAGTATGCTGAATACATCACCAAAGACAAACCGATCACATTTACACAGAAACACATGCCGTATTTCAGGAGGCGGATGGTGTGGGAGATCTTGAACCGAAAACTTCTGCGATAAGATCGTGTTTCGAGGACTTACCTGGGAAAGCAATGACATGAGGCTCTAtctcagagtttttttttt
>XM_026920189.2
GCTTTCGGCCATGTTGTGGTTTTAAATGAGGAAGAAGCGGGAGAGGTTATCGTGCAAAATAAGTTTATGTGCGCTTTTTCATTCAGACTATTTCTTCCGGCTTTCaactcagttaaaaaaaattagccacAAATACTGACACACGCAGAAGACTGTTTTGGGGTAGTTGAGATAGACGAAATATATCTGTTCGTCACTTATCGCTAGTATTAGCATCGCAAGCTaagtagctagttagctaggtaGTTGTCGAGGGGTTAAGCTTGGcttaggttagctagctagctaggtgcGTTTACTGGAAATGGGGATTAGGCTAGTCAGCTAACAAAGCTAGTTAGCATGTGGTAACTCTGGCTACTAGCATGCGCACGGCGGGCGGGAGTTACACGAATGCAGGAGCTCGTTGACGTTAAATGTAATTTGACTTGTGTGGCTTTAGGAGTTTCCTCTAACGAGCTTCAACATGTTCAATAAATTCTACGAATGGATTGAAAGTGGAATAGCAACTCTGCGCAATGGAGTGCCGGCTGCTGGAGATCCATCCGACACCGTCCGAGTTCAACAAGACGCTCCTTCACAGAGGAAAAGACCATTACAGAGtttgGAAGATGGGGATGCCATTAATCATGAAGAGGACAGAGCTGTTAAGAAGTTTAGAATGGGAGATATTATGGACACAGTGAAGAATGCTGCTGAAGGGATGAAGACCCATGGCTCCACTGTTGCTTTGTGGATGCGCAACAGCGTTAGTCCAACCTTGAGGAACATGCTACCTGCTTCCCCTGGCCCACCTCAAACTCACATACCATCACCTGATGCAGCCAATTCATCGGGATCTGTCTGGACTGAAAGCAAGTTAATTGAAAGACCACATGAAACGCACAAGGACACATTCGTTGCTCCAGTAACAGCTTTTGAATGGAAGACTATCATTAAATCAGACTCTTTAAGAACCGAGCAGTCAGTGACTATATCGAAGGTCAGCAGACGACATGTACACACAAGCCTTCCACTCCATGAGACGCACAAAACCAATGGCCACCCAGTTACTACCTGCACTTCTAAACCTTGCCCATCTCCACGACTCGGCCGTCCTATTTACATCAGAGCACAAAGATCACCAAgTCGATTTTCGACACCTGGGCCAAGCACAGGGAGCACGTCTTACACCAGCATGTATGAGAAAACCTTTCCCATTCGAGTAGTGCAGAATCCTTCCCCCGGCTCCTCCGGCCGTCACTGGAGAGGCAGAACTCACTGCACAGCACAAGAGTCAGTACgtgaggaggagaaggaggtgtACAGGCGGTTACTAGCCATGGTGTCCGGCGGCCAGTCATCATTCTTCCATGACAGCACTTCTAACCCAGGGATCCGATCACATCGGGATTTTTCCAGTTTCCTGACTTCGAATCGCAGGCTGCTGCAGTGTGCCTCGCCAGAAGGCTCAGGAGCGGGAGAGTCCTCTCTCGGTTTATCCAGCCTGTCTCCTAGTCCCCAGACCTCGAGCGCAATGCACAGCCCTTCTGCACTCTCCAACGGGCCTGAAACACAGTCCTGGGATCCTGATTCAGATGGCAAATACGTCGCAAGAAAAACAGTGTTAGCCGAGCGGTCAGTGCCCTCCCCGGCGGCTCTTCAAGATACTTCTTCTCAGGACACACAGTCTTCTGCTCATGATGGGGATTCTGTCATTTTTGTAAAGGAGCAACATGGCAAGAGACCAGAGGGCTCCAGCGTACCATGTTTCCAAGCCGAGCTGTGGATCAAAGAACTGACAAGCCTTTATGACGCCCGTGCTCGGGAGAGACGGAGGCTAATAGAGAAGCAAGAGGCTCTGGCATCTCAGCTTCAGCATCAGCGCCTTTCCGGCGAGGGTAGAGCTGATTTAAGAAGTGTGGAGCTGCGGGTGCGAGTCCCTCTAGAAAAGGAGGTTCCTGTGACGCCTGTTGTCGAGGAAGCAGAGCCTGAAGCAGAGGAACAGGAATTCCCTGAGTTGACAGAGGCCATGCAAAATGAGGTGAACCGGGCACTAAGAGGTGGAAGTCAGGACGACGTGCTCAGTGAGGGATTCCGCCTTACCATCACCAGGAAGGACCTGCAGACCCTCAGCCACCTCAACTGGCTCAACGATGAGGTGATAAACTTCTACATGAACATGCTGGTGGAGCGGAGCAAGTCACCCCACCTGCCCTCTGTCTACACCTtcaacacttttttctttcccaaGCTGCGCAGCTCAGGATACTCAACTGTACGGCGCTGGACCAAGAAGGTGGACATCTTCTCTGTGGACATTATCTTGGTGCCCGTCCACCTAGGAGTGCACTGGTGTCTCGCTGTAGTGGATTTCCGCAAAAAGACCATCACGTATTTTGATTCCATGGGCGGGAACAATGACGAGGCGTGTCGGATTTTGCTAAATTATTTGAAGCAAGAAAGTGAAGACAAAAAGAAGCAAGAATTTGATACCTCAGACTGGATCCTTCATAGTAAAAAACGCAACGAGATTCCTCAGCAAATGAATGGCAGCGACTGTGGGATGTTTACATGCAAGTATGCTGAATACATCACCAAAGACAAACCGATCACATTTACACAGAAACACATGCCGTATTTCAGGAGGCGGATGGTGTGGGAGATCTTGAACCGAAAACTTCTGCGATAAGATCGTGTTTCGAGGACTTACCTGGGAAAGCAATGACATGAGGCTCTAtctcagagtttttttttt

Function

NR:

description
PREDICTED: sentrin-specific protease 1

GO: NA

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920188.2 True 2749 mRNA 0.49 18 19119031 19127613
XM_026920189.2 False 2737 mRNA 0.49 18 19119031 19127613

Neighbor

gene id symbol gene type direction distance location
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 415107 18693407 ~ 18703924 (-)
avpr2aa avpr2,LOC108275493 coding downstream 443819 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 511613 18565524 ~ 18607418 (-)
plekhg5b plekhg5 coding downstream 553504 18540263 ~ 18565527 (-)
irx7 LOC108275649,LOC107751843 coding downstream 617220 18500181 ~ 18501811 (-)
trnak-uuu_17 NA coding upstream 851 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 2495 19130108 ~ 19142474 (-)
fitm2 fitm2 coding upstream 16124 19143737 ~ 19148012 (-)
ada ada coding upstream 104233 19231846 ~ 19251695 (-)
gdi1 gdi1,LOC108276388,LOC108425579 coding upstream 182299 19309912 ~ 19319756 (-)
LOC117599228 NA non-coding downstream 11 19117849 ~ 19119020 (-)
G257471 NA non-coding downstream 179249 18939482 ~ 18939782 (-)
G257458 NA non-coding downstream 182640 18934897 ~ 18936391 (-)
LOC113530357 NA non-coding downstream 255909 18809063 ~ 18863122 (-)
G257322 NA non-coding downstream 465716 18653093 ~ 18653315 (-)
LOC113530339 r3hdml non-coding upstream 30678 19158291 ~ 19178092 (-)
G257518 NA non-coding upstream 61064 19188677 ~ 19231641 (-)
G257595 NA non-coding upstream 269329 19396942 ~ 19397151 (-)
G257596 NA non-coding upstream 271974 19399587 ~ 19399842 (-)
G257604 NA non-coding upstream 303549 19431162 ~ 19431386 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other downstream 54449 18936577 ~ 19064582 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 587779 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 818344 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1205754 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2247867 16852928 ~ 16871164 (-)
LOC113530570 NA other upstream 243074 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 303837 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 355480 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 973386 20100999 ~ 20109212 (-)
LOC113530994 NA other upstream 976161 20103774 ~ 20103911 (-)

Expression


Co-expression Network