gdi1 (gdi1,LOC108276388,LOC108425579)


Basic Information

Item Value
gene id gdi1
gene name gdi1,LOC108276388,LOC108425579
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19309912 ~ 19319756 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920203.2
GTCGGTGGTGTAGTCAGGGCCATCTTTGCTGGTGCTCTGCGCTCGCGCTTTCCACTCATAAATACAGTGTAACACGCAAACTGATCGCATTAAAGCATCAGTTATACGACTAGCAAGGCTGCATTAAGGAAGCTACTCtccttgctttgttttttttaataaaaaattaattgtcGCAGGGAAATCTGAGGGATTATAGCTCCATTATAATACACCATGGATGAGGAATATGATGTGATCGTCCTGGGCACTGGACTCACAGAATGCATTCTCTCTGGGATCATGTCAGTCAACGGAAAGAAAGTTTTGCATATGGACCGGAACCCATATTATGGAGGCGAAAGTTCCTCCATCACCCCTCTGGAGGAGCTTTATAAGCGATTTGAGCTTCCGGATGGCCCTGCAGAGTCAATGGGCCGGGGACGAGACTGGAATGTTGACCTCATCCCGAAATTTCTCATGGCCAATGGGCAGTTAGTTAAGATGCTCTTGTACACTGAGGTGACCAGATACTTGGACTTCAAGGTGGTGGAAGGAAGCTTTGTATATAAAGGAGGGAAGATCTACAAAGTCCCATCGACGGAGACTGAAGCACTGGCATCCAATCTAATGGGAATGTTTGAGAAGAGACGTTTCCGGAAATTCCTAGTCTTTGTGGCCAACTTTGATGAGAACGACCCGAAGACTTTCGAGGGCGTCGATCCCAAGCAGACCACAATGGGAGAGGTGTATAAGAAGTTTGATCTGGGCCAGGATGTTATTGATTTCACGGGACACGCCTTGGCCCTCTACAGAACAGACGATTACCTTGAGCAGCCATGCCTGGAGACTATTAATCGCATCAAGCTGTACAGCGAATCGTTGGCCCGCTACGGGAAGAGCCCTTACCTGTACCCGCTGTATGGCTTGGGGGAACTGCCTCAGGGCTTTGCCAGGCTAAGTGCTATTTATGGAGGAACCTACATGCTTAACAAGCCGGTGGACGAGATTGTCATGGATGGCGGCCACGTCATTGGAGTAAAATCTGAGGGAGAGATTGCACGATGCAAGCAGCTGATCTGTGACCCCAGTTACATCCCGGACCGCGTGCGCAAAGCGGGCCAAGTGATTCGGGTCATCTGCATCCTCAGCCATCCCATAAAGAACACTAACGATGCCAACTCGTGTCAGATCATCATCCCGCAGAACCAAGTTAACCGCAAGTCAGATATCTACGTGTGTATGATCTCCTATGCCCATAACGTGGCGGCCCAGGGCAAGTACATCGCCATTGTGAGCACCACTGTGGAAACCGCTGAGCCTGAAGCTGAAATTGAGCCTGCACTCGAGCTGCTGGAGCCCATtgaccaaaaGTTTGTGGCTATCAGTGACATGTACGAACCGACAGATGATGGGTCAGATAGCCAGATTTTCGCGTCGCGGTCTTACGATGCCACCACTCACTTCGAGACGACCTGCAACGACATCAAGGACATCTACAAGCGCATGACTGGCAGCGACTTCGACTTCGAGAACATGAAGCGCAAACAGAACGACGTCTTTGGGGAGGAAGAGCAGTGAGGGAGGGAGACGAGATGGAGGGGAGGAGAAGGCAGTAGTTGTGGACAGCTGTGAGTGGGACCGATTTGAGTGTTTGGGCTTGATTAGTAGTTGATTTGTAGCTGGTATCAGTAAAGCAGGATTGTAGCAATCAAACCAGGCTGCAGGTGTAGTTCAGCTGTCCTACATTTTCCTTCTACTTGTCTAACTCCTTGCTTCCTCCTCGCTCTCAGCTCCTTTTTTCcaaattatgtacattttagCACACAGGCACAACGCTCTTACGCTCACGTTCCCCTGGCTCATCCTTCACAAAGCAGTCTTACATTTTTCGTGAACATGGTATGCATCATTTCCGAGCTACTATCTTGTTGAAGTGAAACATATCCAAGCCTTATTTATTTGGTAGTTGTTTTGGTTAATGAATGATGCCTTTCATAGCAGCCCTTGTGTGTTTACAAACTCCATTAACACTAGGAGCAAGAAGATATCTTGTGAAATTgctataaacacaaaaaacaagtaTTTTTAGTTCCCGAACCATTTATAAACAGGATTGTTAAATGAACACACTAAGAGAATCACCTTTAAAAGCCTTCGACTAGCTGAACGTGTGTGTTACTGACAAGTGTAAGGCTGTACTCTGATGATTTTGCACATACACATTATGAAACATCATTCAAATGTCATAACAAAAGGAAGCTGATCTGACCGATGGACGATTTgtctttaatatatattatcaGTACGCATGCATGCATCTTTCATTCAGCACCTTTCCAAACGACACTGCTTTGAAcctaaaacctctacagacacgcTCGGCTTATTTAACCGTTGGATAAGGATGGGTATGAGACCACATATGCAGTACGGAATTGGAGTTTAAAAGCCATTAACATAATATTTCCGTTGCCCGCGTAGAAGCCGTGTTCAGGatctacagcagcagcagtttgtATAGGAATCATGGTAATGTGAATCTTACCTTTAATATATATTGTGCCCCCGTTGTGGTTCGACACTTGTATATCTTCTAGGTGTTCTGGTTTGTTAAACTAGGCTGGACCCTGGTCTAAGAACTTAGAGTTGTGTGTTCTCTTCTTTCTTCGTGTTGATTTTGATAGAAATTGTCCTGGAGTGGTTCTTCCCATCATGCTTCTTCAGCCGCAGCAATGATTTATACTTCAACACTGTATAAAGACTTAACATTCATGTTATGTTagagttttttaaattacacaagGAATAGGACTTTCAGACTTTTCCTTGTGTTATTTATAAATGACCAAATTCCACCGAAGGTCCATTCCAGCTTTTAATTCTCAAAAAGTGctctttgtgtctttttttttacattaccgCAGAAGGTTTTGGTGGACATCTCATCTCACAGTGATGCTGTTTGACTACTATGCTACTATAAGCACACACACTGGTACAATTTCCTCTTCTTTCCTCCACGTGAATTATTAACTgaccaacaaaaaaattaacactggAAACTGGATCAAATAGCATTAATCTTACTGGTGAACGTAGCTCTTATTGAAATTGACCTACTATCTGTTTTTATGTTGAACTCTAGTAgctgtttaaatattattttgcactttatttattttcctgtatgTGTATCATGGAACTAAACACTTAACACTGGCATATGAACGTGAAACAGTTGATGACTAAGATGTGACTTTATCACAAGTGTTTGAGCAGTCTTGTgcaatgaatgaaaaatgaattcaaatgtgaataaaatgctgaaaatacGAA

Function

symbol description
gdi1 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability; non-syndromic X-linked intellectual disability 41; and psychotic disorder. Orthologous to human GDI1 (GDP dissociation inhibitor 1).

NR:

description
PREDICTED: rab GDP dissociation inhibitor alpha

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920203.2 True 3318 mRNA 0.44 11 19309912 19319756

Neighbor

gene id symbol gene type direction distance location
ada ada coding downstream 58217 19231846 ~ 19251695 (-)
fitm2 fitm2 coding downstream 161900 19143737 ~ 19148012 (-)
LOC113530333 faim2 coding downstream 167438 19130108 ~ 19142474 (-)
trnak-uuu_17 NA coding downstream 181376 19128464 ~ 19128536 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding downstream 182299 19119031 ~ 19127613 (-)
LOC113530330 NA coding upstream 14369 19334125 ~ 19363567 (-)
LOC113530320 NA coding upstream 83904 19403660 ~ 19429977 (-)
LOC113530319 LOC108276210,LOC107564641,LOC107716162,LOC107570136,LOC107695834,LOC107668555 coding upstream 146872 19466628 ~ 19481596 (-)
tmem269 pss,LOC108275772,LOC101473555,LOC102292634 coding upstream 314298 19634054 ~ 19651590 (-)
hspg2 hspg2 coding upstream 340877 19660633 ~ 19777934 (-)
G257518 NA non-coding downstream 78271 19188677 ~ 19231641 (-)
LOC113530339 r3hdml non-coding downstream 131820 19158291 ~ 19178092 (-)
LOC117599228 NA non-coding downstream 190892 19117849 ~ 19119020 (-)
G257471 NA non-coding downstream 370130 18939482 ~ 18939782 (-)
G257458 NA non-coding downstream 373521 18934897 ~ 18936391 (-)
G257595 NA non-coding upstream 77186 19396942 ~ 19397151 (-)
G257596 NA non-coding upstream 79831 19399587 ~ 19399842 (-)
G257604 NA non-coding upstream 111406 19431162 ~ 19431386 (-)
G257819 NA non-coding upstream 144298 19464054 ~ 19465336 (-)
G257838 NA non-coding upstream 159768 19479524 ~ 19479732 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other downstream 245330 18936577 ~ 19064582 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 778660 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 1009225 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1396635 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2438748 16852928 ~ 16871164 (-)
LOC113530570 NA other upstream 50931 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 111694 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 163337 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 781243 20100999 ~ 20109212 (-)
LOC113530994 NA other upstream 784018 20103774 ~ 20103911 (-)

Expression


Co-expression Network