ada (ada)


Basic Information

Item Value
gene id ada
gene name ada
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19231846 ~ 19251695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920207.2
CTGAACTTTCAGGCTCAGCGCGTGCAGCTTCGTTTCAGTTTGTCGCACGAGTAAGTCGCTTGACTGGGAAGCATGGCGGAAAACGGGGTGAACAGCGGAACAGCTACTTTTGACAAACCCAAGGTTGAACTGCATGTACATCTTGATGGTGCCATCAGGATCGAGACCATACTTGATGTGGCCAAGAGGCGAGGTATTACCCTCCCTGCAACCACAGTGCCCGAGATGACCAGCCTGTGCTCAATGGATAAGCCGGGAACACTCACCGAATTCTTGGGCAAGTTTAACCAGTACATGCATGTCATTGCAGGGGACAGAGAGGCCATTAAAAGAATTGCCTATGAGTTTGTGGAGACCAAAGCTAAAGAAGGAGTGATTTACGTGGAGGTGAGGTACAGCCCGCACTTATTGGCCAACTGCAGAGTGGAGCCGATACATTGGAACCAGAAAGAAGGTGACGTGACACCAGACGACGTGGTGCATCTTGTGAATGAGGGCCtgaaggagggagagaaagcCTTCAGGATCAAAGCTAGGTCCATTTTGTGCTGCATGCGGCACATGCCAAACTGGTCCATGGAAGTGGTGGAGTTATGTAAGAAGTATCGAAACGATGGCGTAGTGGCCATAGATATAGCAGGAGATGAATCTCTAAACTGTGAAACCTGTCCTCTTCACCGCGAAGCCTATGAGGAAGCAGAGAAAAGTGGCATCCACAGAACAGTGCATGCGGGAGAGGTCGGCCCTTCATCTGTTGTGAGAGAGGCTGTCGAAGTGCTGAAAGCAGAGCGTATTGGACATGGTTATCACACAATCGAAGACGAAGTTCTGTACAAACAGCTGCTTGAACAGAATATGCATTtcgagACATGTCCAGTCTCCAGTATAATGACAGGAGCTTGTGATCCAGACTTCACTAAGCATCCACTCATCAGGTTCAAGGAAGACAAAGCAAACTACTCTCTGAATACGGACGACCCTCTGATTTTAAACTCCACCTTGGACTCTGACTACCAGGCTGCGAAGCAGTACATGGGCTTTACTGAAGAAGAGTTTATGCGGCTGAACATAAATGCAGCCAAGTCGTGCTTCTTGCCtgaaaaggagaagaaggacTTACTGAATCAGCTCTACGAGGCCTATGGCATGATCAACGACACTAGCTTCTAAGCACAGATCACCTAACCGAAAGCAGACTGAGCCTTTCCGATACACTCCCACAGGAATTAAATCCCTTAACTAAGCACTTACTTCAATAACAGAGAGCACTCCCTCTTTTTGTGTTTACCACACAGTAATTAAGTACCACctcacatttatatacatatatatatatatatat

Function

symbol description
ada Enables adenosine deaminase activity. Predicted to be involved in T cell activation; negative regulation of adenosine receptor signaling pathway; and nucleobase-containing small molecule metabolic process. Predicted to act upstream of or within nucleotide metabolic process and purine ribonucleoside monophosphate biosynthetic process. Predicted to be located in several cellular components, including cell junction; cytoplasmic vesicle lumen; and lysosome. Predicted to be active in cytosol and external side of plasma membrane. Is expressed in several structures, including digestive system; gill; heart; kidney; and muscle. Human ortholog(s) of this gene implicated in adenosine deaminase deficiency; asthma; and severe combined immunodeficiency. Orthologous to human ADA (adenosine deaminase).

NR:

description
PREDICTED: adenosine deaminase isoform X1

GO:

id name namespace
GO:0042110 T cell activation biological_process
GO:0060169 negative regulation of adenosine receptor signaling pathway biological_process
GO:0046103 inosine biosynthetic process biological_process
GO:0006154 adenosine catabolic process biological_process
GO:0043103 hypoxanthine salvage biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0060205 cytoplasmic vesicle lumen cellular_component
GO:0030054 cell junction cellular_component
GO:0004000 adenosine deaminase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01488 add, ADA; adenosine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920207.2 True 1342 mRNA 0.47 11 19231846 19251695

Neighbor

gene id symbol gene type direction distance location
fitm2 fitm2 coding downstream 83834 19143737 ~ 19148012 (-)
LOC113530333 faim2 coding downstream 89372 19130108 ~ 19142474 (-)
trnak-uuu_17 NA coding downstream 103310 19128464 ~ 19128536 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding downstream 104233 19119031 ~ 19127613 (-)
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 527922 18693407 ~ 18703924 (-)
gdi1 gdi1,LOC108276388,LOC108425579 coding upstream 58217 19309912 ~ 19319756 (-)
LOC113530330 NA coding upstream 82430 19334125 ~ 19363567 (-)
LOC113530320 NA coding upstream 151965 19403660 ~ 19429977 (-)
LOC113530319 LOC108276210,LOC107564641,LOC107716162,LOC107570136,LOC107695834,LOC107668555 coding upstream 214933 19466628 ~ 19481596 (-)
tmem269 pss,LOC108275772,LOC101473555,LOC102292634 coding upstream 382359 19634054 ~ 19651590 (-)
G257518 NA non-coding downstream 205 19188677 ~ 19231641 (-)
LOC113530339 r3hdml non-coding downstream 53754 19158291 ~ 19178092 (-)
LOC117599228 NA non-coding downstream 112826 19117849 ~ 19119020 (-)
G257471 NA non-coding downstream 292064 18939482 ~ 18939782 (-)
G257458 NA non-coding downstream 295455 18934897 ~ 18936391 (-)
G257595 NA non-coding upstream 145247 19396942 ~ 19397151 (-)
G257596 NA non-coding upstream 147892 19399587 ~ 19399842 (-)
G257604 NA non-coding upstream 179467 19431162 ~ 19431386 (-)
G257819 NA non-coding upstream 212359 19464054 ~ 19465336 (-)
G257838 NA non-coding upstream 227829 19479524 ~ 19479732 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other downstream 167264 18936577 ~ 19064582 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 700594 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 931159 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1318569 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2360682 16852928 ~ 16871164 (-)
LOC113530570 NA other upstream 118992 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 179755 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 231398 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 849304 20100999 ~ 20109212 (-)
LOC113530994 NA other upstream 852079 20103774 ~ 20103911 (-)

Expression


Co-expression Network