LOC113530333 (faim2)


Basic Information

Item Value
gene id LOC113530333
gene name faim2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19130108 ~ 19142474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920220.2
CTCTGTAGATTGTGCTTTAGTGCTGGATGTTGCTAGAATGTGCCTTTTGGAGGAAGGGAGGGGGATCAGTCAGATTAATAGAGCTGCTCTGCGGGATTACACTATTACAACAGTGCATAAGGTTTCATCTAAACAGACCAAAACAAGCATCTCTTTATTTGCAACAAATTAGTGGAATAGACACAAAAGGAAGAGTGAAGAAATACAGAAGAACTATATAGGACGATTGATCAAAACAGACATTTATCATGACTCAAGGCAAGCTTTCAGTGGCAAACAAGTCAAATGAAGGCTCATCACTGCCTCCACCACCTCCAAGCTATGAGGAGGCCACTGCAGGTGGAAGCCCCAGTTACAGTGGCAACTATCCTGATGAGGGAGAAATGTTCACAGAGTTCTGCTGGGATGACCTGAACGTACGCCGAACATTTATACGGAagGTCTATGCCATCCTCGCACTCCAGCTCTCTGTCACCCTGGCCATTGTGTCTCTCTTCACTTTCTGtgaTCCCATAAAGGACTATATTCAGTCTAATCCTGGATGGTACTGGGCAGCATACGCAGTGTTCTTTGTAACCTACCTGACACTGTCCTGCTGTGCTGGACCGAGGAGGCAGTTTCCATGGAACCTGATTCTGTTGGCCATCTTTACTCTGTCTCTTTCATATATGACAGGAATGTTGTCCAGttaCTACAATACCAAGTCTGTGATGATCTGTTTGGGTATTACAGTCCTGGTCTGTCTCGCCGTCTCAGTTTTTAGCTTTCAGACAAAGatTGATGTGACCTCATGTCAGGGTGTGCTGTTTGTCACGTTCACCTCATTCTTAATATGTGGACTGGTCCTGGCTTTTATTCTTCCCTTTGGCCATGTTCCTTGGATGCACACTGTGTTTGCTGGGCTGGGAGCGATACTGTTCAGCATGTTTCTGGCATTCGACACACAGCTTCTGATGGGAAAAAAGCGCTACACTATAAGCCCAGAGGAGTACATCTTTGCCACACTCAATATCTACCTGGATATTGTGTacatcttctctttttttctccagctTTTTGGAAATCAGAGGGAGTGAGCCGAGCTTAACCCTGCTCTCCTAATTAATGCATTTCCAGGGCTATATGCAATGTGAAGTTACATCTCACCCCGTTGTATTCTGGAGTGATTTGCCATCTTGTGAGAATCACAGTGTGTATTGTTATTTGCATTGCATTAGAAATTCATAATACTCCAGTATTTTCAAGCTAATCTCTACCAACCAGATCTGTAGTTTGTTTGTGTGATTAGCCCAGACAAGAATAGAAAACTTATTTATCCAAAGCTCACTTAGAATCCCACTAAGAAACAGCTACTGGATtaaattcagaaatatttaGAAGGCATGATGATATaacacaaattcaaaactaATAGCTACACTAACGTTAAAGGTCTTAGGAAGGGAAACATGGGAGAAGATCTTAGCAAAATTATGTAGTTTTAGTCAACCTTCCAATACCAGAACAATTCTGGTTTGTTTTCTGAAGGCTTTGTAGTGTCCATGTGCCATCAGTCTGAAACCTGGGCCCTTTCATGTTTGTGTCTATGCAGAAAACATATAGCCACAAATTTCGATGTAGAACAAATCCCTTTCACTGAAAAATTCACAAAGCCATTCAACCAAAACTTTCTGCATAAGCAgcctttaaatatatataagtaaataagtagCCATAGCAAAGCTAATAATGGGTGAAtggtactactactactactactactactaataataataataataataataatgatgcatATTTATGCTGTATTGTTTATGCGAGGCAAATCTCAAACTGCTACAGAGTAAAAATGATACATAAGATAAACTATGTTAAAAGGCAAAGTACTTTAAAGGCcttaaaattatacaaaaatatggaaattataCTAAGATATTAAAATGGGCATAATGAAATTTATTGAATTGCATATTGCATAAAAAGACACAACAGTGCAAATTAATAggtcataaaatattaaagaatataCTGTTGCAAAACCACAAAgttagccatttttaaaaaagtaacatttttaattactcTCTTAAGCAAAATAGTAGTATGGCAGAAATGAtctaaaatctgaaaaatgaataGTTATTGATTCGCTCCACTATATCAGagaaaattgtatttatatattgatAAACTATCCTAGCTAAGAATAATCCtggatatattttaaaaaaaaatgcataaaaagtttaaaaaagaaataccaAATACTCGATCAGTCGTATCTGATGCTGTCATATTTGAAAATTTTGTAATAAGAAACACTCTGAGCCTCACAAGATGCAGATACCTTCCCAACACAATGCAGCGTGAGATAACTCCATGTTCCCTGTAGCCTTCTTTCTCTGTTTAATTCCTGTTTCTAGTTTGAATGATCCTGTCCTCTCAgtgttttattgtaatgtttggTCCTTGAGCTAAGCTTCTCTCCTGCTCCAGTGATTGCTCCACATCTTTATCCTGTAATTCTGAAGTAGGATGTACAGAACTACATCTATGAAAGGATAGATGCAATTTAAATACAAGTGTgtatgacaaaagaaaaatgtgttacatGCATACATGTACAGTGCCAGTATTTCTCatgtgctttaatataaactatGAAACTGAATACTTTTCTTGTGAAGGAAATGAGCaattatgttatattaaaaaacacCTAAATGCATAGAACCATCATAACTAGATGAAATTCTTTTAGGCTGTTCTGAAGCTGTATTTCCTCCTTGATAAAGGGCCCAAGGTTGATCTAGTTGCACGTCAACATGTGTATAGATAATttctataaaatgtattttgtggAGATTGTATGCAAAGCTAATGTatgttttctgctttttctaAAATCCATTCAGCACATGATTTGCagtctttcactttctctcactgGTGAATATGTTTCTGTTTGACCTGCAGTGGTTTCTACAGATTTTCCTCACTGTCAGTACTGGCATCATTCTCATTAgcatgaaattatttatttatttatgatattcTTTCTCAGCATTGTTCaatttttatggtttttttttattattatttttgaaataagACTGTAGTGAGGGATCTTGACTGTGCAGGGTGGTTTTTACTTTatagaaaagtgtaaaaaaaaataattacaaaagtaGTTTTGAtggtatatatatttttgatagaaAGTAACAGAAGAATTGTGaaatgtgatgtaaataatataatctTATGTGTCAAATGTTCGTCATGCATATAAGCCTGATGCCTATCTCTGAGACACGAATAAATAGCAGGCATGTTTTATTGAA

Function

symbol description
faim2 Involved in regulation of neuron apoptotic process. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Located in membrane raft.

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920220.2 True 3344 mRNA 0.36 12 19130108 19142474

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_17 NA coding downstream 1572 19128464 ~ 19128536 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding downstream 2495 19119031 ~ 19127613 (-)
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 426184 18693407 ~ 18703924 (-)
avpr2aa avpr2,LOC108275493 coding downstream 454896 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 522690 18565524 ~ 18607418 (-)
fitm2 fitm2 coding upstream 1263 19143737 ~ 19148012 (-)
ada ada coding upstream 89372 19231846 ~ 19251695 (-)
gdi1 gdi1,LOC108276388,LOC108425579 coding upstream 167438 19309912 ~ 19319756 (-)
LOC113530330 NA coding upstream 191651 19334125 ~ 19363567 (-)
LOC113530320 NA coding upstream 261186 19403660 ~ 19429977 (-)
LOC117599228 NA non-coding downstream 11088 19117849 ~ 19119020 (-)
G257471 NA non-coding downstream 190326 18939482 ~ 18939782 (-)
G257458 NA non-coding downstream 193717 18934897 ~ 18936391 (-)
LOC113530357 NA non-coding downstream 266986 18809063 ~ 18863122 (-)
G257322 NA non-coding downstream 476793 18653093 ~ 18653315 (-)
LOC113530339 r3hdml non-coding upstream 15817 19158291 ~ 19178092 (-)
G257518 NA non-coding upstream 46203 19188677 ~ 19231641 (-)
G257595 NA non-coding upstream 254468 19396942 ~ 19397151 (-)
G257596 NA non-coding upstream 257113 19399587 ~ 19399842 (-)
G257604 NA non-coding upstream 288688 19431162 ~ 19431386 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other downstream 65526 18936577 ~ 19064582 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 598856 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 829421 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1216831 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2258944 16852928 ~ 16871164 (-)
LOC113530570 NA other upstream 228213 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 288976 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 340619 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 958525 20100999 ~ 20109212 (-)
LOC113530994 NA other upstream 961300 20103774 ~ 20103911 (-)

Expression


Co-expression Network