hoxc12a (hoxc12a,LOC108275575,LOC108433365,LOC103031159,LOC107664239,LOC107593973,LOC107697936,LOC107715004)


Basic Information

Item Value
gene id hoxc12a
gene name hoxc12a,LOC108275575,LOC108433365,LOC103031159,LOC107664239,LOC107593973,LOC107697936,LOC107715004
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20347159 ~ 20350929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920252.2
GGAACCTGCAGATATAGGAAAGTGAAAAACAAGAGTCTACATTTTAATACGGaattttatagtatttttaaaaagcatataaAGACCCGTAACACAGaagttaatgttttgttttgtctaaaATAGACCAAGTGGGTGGTACCTTCTGGAGTTCGAGTAAGCTCCGCCACGTGACGTGGAGATGACCAATCAGGTGCATCTCCAGGTTTAACTACGTTAAATGTCAGATTGCAATAAACTAGAAGCTGTTGGTCAGGCCCGCGGAAATGGGCGAGCATAATCTCCTTAATCCTGGGTTTGTGGGACCTTTGGTAAACATCCACACTGGAGATACGTTTTACTTCCCGAATTTTAGAGCCTCAGGGGGACAACTGGCGGGGCTACCGTCTCTCTCGTACCCAAGAAGGGACAATGTGTGCTCCCTCCCGTGGAATCCATCGGAGTCGTGCAATGGATATCCTCAGTCCTACTTTGGTAGCCCTCTGTCCATTAATCCCTCTTTCAACCGATCTTGTGCTGAAACAGCCCGACCGGACGAGAAATGTTATTATGGCGGCAGCGGCGGCAACAGAGAGGCTTGCTCGGACGGCACAGTCAGCCTAAAACGAGAAGAGAGAACATCAGTATCATCAGATCACGGGGTGCACAATGGGATGGGCAACAGTAGTACCTACACCAAGTATGACTATGGCACCGAACATCTGACCCCAAACCCGCCGTCCTGTCAGTCTCTCGAATCCGATTCCAGCTCCTCAGTGCTCAACGATGGAGGAAAAAGCTCGGCAAGCGATACACAGACCCTGATATCGCCCTCAAATCACACGAGCAATATCTCAACAGGAGGAGGTGCCCCTTGGTATCCGATGCACACCCGGACTCGCAAGAAACGAAAGCCCTATTCTAAACTGCAGCTGGCTGAGCTGGAGGGCGAGTTCATGCTAAACGAATTCATCACTCGGCAACGGCGGAGGGAGTTGTCAGACCGGCTGAACCTTAGTGACCAACAGGTTAAGATCTGGTTTCAGAATCggagaatgaagaagaagagactGTTGCTGAGGGAACAGGCCTTAACCTTCTTTTAAGCAGTCGTTTATTAGTAGCACCACACCAATCATCCACTGTGGGTAATATTAAAACAGCTCAGTATTATTCTCAatagtctttatttttttggtttaatatttatgcatttttgcGTAATAGCAAATTCATAAGAAAGCAGAAATTATTTCAGGGAAGGCGACCAAATgttaacaggaaaaaaagctCTGTTGATATTAcactttgtttttgtaatatatgTATTAAAGTGGTTCAGAAAATGTATGTTAACATGCGTTATTTGAAAGAGACCTGGCCACTTTTGCTCTCCACTTCGAATTGCAATATATTGCAAGTTATATAGGATATTTACTCAAAGTTAAGCTGTGAGATATTCAATCAAAGCGAAAGTATATGCCTGTATTTAACTGGCAATTAAACATGCTTTGTGAGATGTACTGTCAATAGTATCAGCTATTTATTACTTcgtaaaattacaaaaattctGCAGTATCTACTTGCGCATTGTTCAGAAGTAATTTTACTCCATACTCCATGGAAACAAATAATTAGCGAGGCCCTAAATGAAGAGCGCTAACGGTTGCTGCCCTTAATAGCCAccgcactgcaaaaaaaaaaaaacttaatattttcaCGAACCTTACTACTTCAGTGGGCATAATCCTTAATGCTGATCTCTGCAACCAGGAAGGGGAAGAAGCCTAAAAACAGTGTGGAGCGGAAAATCATGAAAACCATATCTCGCGCCACGTGTTCTCAGGCACGTTCACGGTCATGGGCACAAAGTCAGTCAACTAGCTGAGCTTCAGCAGGTCTGAGAGACTTCAAAACCATACCGCAGCTGGAATAAATTCTGCCAGGTGATCGATGCCATGTTGTCTCTCTCAACTTCATTGCTTTTAGGCACGACCTGAAGTCAGACTTGGTAAAGACTGGTATTAAGACTGATATAACTGTGCTGGTATAAGTCTGGTATTACTATGTTGGTATGTCTGTGTATTTTGTAACACCGTGTTGTTACTTCTACATTACTCCTATTGATAAGTTTATTTATAATCCTTATAATAAAGGTCGTGCCACAGACTTGGCACGGAGAATAATTTCTTTCATAATTGCATGTCCCTTGATCCAAGTTTAGAAATAAGTAGGCCAACTTAATTAAGTCTCTAAAATGCTTTTGGGAGGGAAGTGCATGATTCATTGTCAGTTACTATAGTCTACCTTGGTGAAGGGTAAAAGATAAAGTATCTGATCAGTCTTAAGAACACATCACACGATGCTAAAAACATATTCCCAATTCCCTATAAGCGAAGGCATCCTTTTATTAGAAGATATTGCTTCATATCAAGAAATCTGATAAGAATATAATTTCTTGATTTCTTGATATTACGCAATGCATATATTGCATGTTATTTATGGTACTAGTTAGCGCCTCTTACGTTTCAGTGTTGagcatgtattattttaaagacactttatcaaaagagaaaaggaatgTCTTAATCTTGTGAAAAAAGAAGTGGTTAGAATCGTACCGTGATATTTAAGCTTTAAAACAAACtattgcaaataataataataataataataataataataataatactaataataataataatgataataataagccACTTCTTCATCGGTGctaccttttccttttttcgGGTTGTTATGCAACTCATATTTTTGTAGATCATTTCTGCATTGAAACCTTCTTTCGTGAATCTGTGGAAAATGTGTCATCACATATTTAACGCTACTTTCCATTCtcccatttttctatttttatgtcgCATTCCTCTTGAGATCTAAGACTGTCCTGTACATAACGCTGCGAATTCTTGAATGTATTGATGTATGTGTAGCCCAAGGTTTCTGTTAAATAAAGTCTATAAACTTC

Function

symbol description
hoxc12a Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HOXC12 (homeobox C12).

NR:

description
homeobox protein Hox-C12a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09297 HOX_12; homeobox protein HoxC/D12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920252.2 True 2971 mRNA 0.40 2 20347159 20350929

Neighbor

gene id symbol gene type direction distance location
hoxc13a hoxc13,hoxc13a,LOC108275585,LOC103031462,LOC107715003 coding upstream 6612 20336971 ~ 20340547 (+)
rarga rarg,rarga,LOC107715005,LOC107593976,LOC107697942,LOC107664174,LOC107707012 coding upstream 78372 20232088 ~ 20268787 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding upstream 148507 20183237 ~ 20198652 (+)
LOC113530927 tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211 coding upstream 192063 20147178 ~ 20155096 (+)
pmelb LOC108275940 coding upstream 208861 20129706 ~ 20138298 (+)
hoxc11a hoxc11,LOC108276183,LOC107715002,LOC108433364,LOC107593971,LOC107706974,LOC107664237 coding downstream 7243 20358172 ~ 20361279 (+)
hoxc10a hoxc10 coding downstream 15528 20366457 ~ 20370016 (+)
hoxc8a hoxc8,hoxc8a,LOC108433404,LOC107593970,LOC107664222,LOC107598875,LOC103032829,LOC107697938,LOC107714926 coding downstream 19167 20370096 ~ 20386828 (+)
hoxc9a hoxc9,hoxc9a,LOC107697937,LOC107707007,LOC103033146,LOC107593969,LOC107598864,LOC107714960 coding downstream 26299 20377228 ~ 20380030 (+)
hoxc3a NA coding downstream 38228 20389157 ~ 20431053 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 237933 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 243119 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 247661 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 276911 20058251 ~ 20070248 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding downstream 19066 20369995 ~ 20386813 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 216861 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 260612 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 312753 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 331441 20682370 ~ 20756538 (+)
si:ch73-206d17.1 LOC108275771 other upstream 642096 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 868264 19478302 ~ 19478895 (+)
pkig NA other upstream 1124600 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1412840 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 3158782 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 39880 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 159315 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 552176 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 877391 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1187116 21538045 ~ 21542427 (+)

Expression


Co-expression Network