esyt1a (LOC108276191)


Basic Information

Item Value
gene id esyt1a
gene name LOC108276191
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18850483 ~ 18877346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920254.2
CTCTACTCCGAATGATTGCAGCGCAGCCACGTAGCGCTCGAGCCACAACTCCACTGCATGCTCAAGCAAATCGCTTTTTACATCAAAGCGCAAATGATCGCACGCGCAACACCTCTCCTTTTGTGAAGGAAAGCCTTTATTGTCTGGGGAGGGGAAAGGTAGCGGgtgttttgggtttttgtgtgtgtgtgtgcgggaaGCGGCGATGCAGCAGGAGGATGCGGGGCCGCGCTCCGGCGCTGAGGACTCTCCTGCTCCAGACACCGCGGCCAAACAAGCCGTTTCCGTGCTGCTGTCTTTCGGGAAGTGCCTCGGAGCACTGCTGCCCGTCTACCTGGCTGGATATTTCGGCTTCAGCCTGACTTTTGTCCTGCTCGGCCTCGCTGTGTACATGGGATGGCAGCAGCACCGTGATAGAAAGCAGCACCGCCTGCACAGCGCTATGTATCTGCAGGAGAATGAGCAAGATTTCACCACAACACAAGTGTTCAAGAGCAAGCGGGAATTGCCGGCATGGGTGAATTTTCCAGATGTGGAGAAAGTTGAATGGCTTAATAAGATCCTGAAGCAAGCCTGGCCTTTTGTGGGCCAATATTTAGAGAAGCTTCTGTTGGAGACGGTTGTACCCTCGATCAGATCTTCCAACGCTCATCTTCAAACATTTTGCTTCACCAAAATTGACCTGGGTGACAAGCCTGTGAGGGTGGTTGGAGTGAAGGCCCACACTGAGCATGATAGACGTCAGGTGTTGCTGGACCTATATATCAGCTATGCTGGCAACGTGGAGATCAATGTGGAGGTGAAGAAGTACTTCTGCAAAGCTGGAGTGAAAGGAATTCAGCTGCATGGAAAGCTGAGGGTGATCCTGGAGCCGTTGATTGGAGATGTTCCTCTTGTTGGAGCTATCACAATATTCTTCATCCAGAGACCTATGCTGGATATCAACTGGACAGGACTCACCAACTTATTGGACATTCCAGGTCTGAATGCCATGTCGGACACTATGGTAATGGACGCTATCGCCTCTTTCCTGGTGCTCCCCAACCGCCTCACTATCCCTTTGGTGGCTGATTTGCACGTAGCGCAGCTCCGCTCCCCTCTGCCACGGGGCATCGTGCGGATCCACTTGCTGGAAGCCGAGAACCTGGCCGCCAAGGATAGCTACATCAAGCGCGTGATCACTGGCAAGTCGGACCCGTATGCCGTAGTGAGGGTTGGCACGCAAACGTTCACGTCACGCCATGTGGACAACAACCTCAACCCGCAGTGGAGGGAGATGTATGAGgtgatAGTTCATGAGGTCCCTGGCCAAGAACTGGAAGTGGAGATATTTGATAAagaccctgatcaggatgaTTTCCTAGGGAGgaTCAAGTTGGACTTGGGTATTGTAAAGAAAGCACAAGTTTTGGATGAGTGGTTCAATCTGAAGGATACACAAACTGGAAAGGTTCATCTCAAGCTCGAGTGGCTTTCACTGCTGCCCTCTGCAGAGCGCCTTACTGAGGTCCTCCAGAAGAACCAAAACATCACCACCTTTGGTAAGACGACTGATCCTCCCTCTGCCGCCATCTTGACCGTGTACCTGGATCGGGCCCAGGATCTTCCTCTGAAGAAAGGAAATAGGGATCCTAGTCCTTTGGTGCAGCTTTCTGTTCAGGATACCACCAAAGAGAGCAGGactTCTTATGGCACCAGCAGCCCAGTGTGGGAGGAAGCCTTTACCTTTTTCATCCAGGACCCTCGCAAACAGGACCTTGACATTCAGgtgaaAGATGATGACAGGTCTCTGTCCCTGGGCAATGTGTCCATCCCTCTGTCTCGCCTGCTTTCTGTTGCTGATCTCAGCATGGACCAGTGGTTCCAGCTGGAGAACGCGGGCCCTGCCAGTCGCATCTATGTGAACGTCATACTGAGGGTACTTTGGGTTAATGAAGAGGCCATTCCCACCTCACCTGTATCCCCACTTCCCTCTGATCCATTCTCTGGAGGAGGAAAGGAAGGTTTCACCTCAGACGTGACATCAGGAGGGATCACGAAGTTACCCACGCGTCCACAGCACACCAGCCCAGATGCCAATTTTGCCTCTGAGGGTGTTCTGAGGATCCACCTGAAGGAGGCCCAGGCTCTCATAGCTAAAGATAGCTTCATGGGCGGCATGGTGAAGGGCAAAAGTGATCCCTACGTAAAGATCCGTGTTGGAGGGACGACCTTCAAGAGCCGCGTCATAAAGGAGGACCTCAACCCAGTCTGGAACGAGCTTTACGAGGTGATTCTCACGGCACTCCCAGGCCAGGAAGTGCAGTTTGAATTGTATGACAAAGACGTGGATCAGGATGACTTCCTCGGGAGGTTTAAGCTGAGTCTAAGTGGCCTCATTAGCTCCCAGTTTACTGATCAGTGGTACGACTTGAATGATGTGAAATCAGGACGAGTTCATGTGATGCTGGAATGGGTGCCAAGAGTTTCAGACCTGACCCGCCTTGAACAGATTTTGCGCTACCAGTCTCAGCAGTCGTACGTGAATAAAGCCGTGCCGGCTGCAGCCATCGTCTTCGTGTATGTAGAGCGAGCCTATGGTCTTCCTTTAAAGAAGAATGGACATGAGCCAGTCGTGGGAGTTGAGCTGGTTCTCAAGAATGTTTCCTCCAGGAGTAAACTTGCTGAGCGCTCTACATCTCCACACTGGGATGAAGCATTCTGCTTTCTGGTCCATGACCCCAGAGAGGAAATGCTTACTGTCAGActgtctCACAGCTGGGGACAGCCTCTGGGTGCAGTGGTGCTGCCTGTAAAAGATATACTGAAGGAGCCAGGCTTGGTTCTGGATCGGTGGCTTCCTCTGGATGGGGCCCTGCCTGAAAGTGAGATATTGTTAAGGGCAGAGCTCAAGCTGCTTCACTCTAAGTTGGTGGAAGATGATGCTACTAGTGGCATTGAAGAGGTGGAGCACAGCATCCCCAGTGCTAATATAGAAGTtgcagccaatcaggagctCAGACACAGGACAGCTCCCGCCCATGGaggcgGAGATGCTGGAGCTAGTGGGCGGGGCCAGGTGAAACTCACTATTGGTTACTCGACTGATGAGAACAGACTGGTCATCACTGTCCATGGCTGCAGAAATTTGCCGTCATGCTCCAAGGATGGCTCAGATCCCTATGTGTCCTTCATCCTCCAGCCTGACAAGAACAGAAGCACCAAAAGAAAGACGAGTGTCAAAAAGCGAGACCTCAATCCTGAGTTCAGTGAGAGGTTTGATTTCATCCTTTCCCTGGAGGAGGCCACGAAGAGACGCCTTGACATGTCCGTCAAAAACAGTGGTTCTTTCATGAGCCGTGAGAAAGAGACCATTGGCAGGCTGCAGTTAGATCTGGATCAGATTGACCTGAAGGCAGGGGTGCCGCAGTGGTATGATTTAACAGATGAGACCAAATAATCTGGCTTTTGTATGCTTCTGTGACAATCCCTTCGCACCTGTACGTCTGCATCTGCATGCTGCTAATGTCATTTTACGTGTATAGCACAGTGCAGGGGGGCAAATGAAGGAGAAAATGTTACGTCATGTGATTTACGCTCTGTACTTGCTATAGTTTCCAGCAATACCAAATGCATTTTGGACAGGCTGTAACTGTCAGTGCACGCCAGCAAAATAACGTGCCATTTTGACCCAAAGGGTAGAAAACAGTTTGAGTATGAATAAGTcttgatagaaaaaaaaacacttaaccATGCCAGATAAAAGGACTGAAACACTGTTCCTCTATGGTGATCTTAAATAAAGAGTTTCCTTGACGaggtttattattttagcatCAAAGACACATTCccacatgcttttttttcatattttagcaTATTACATAGCATTACATAATGATTTCTAAAAGCTTTATTCCTTAAAAACGGGTAAAAGTGTAGTTATTTAAAGAACCGTCATAgaacagttttctgtaagagtCTCATTACTGCTTCTTTATACGCTGGAGAAGTGTCATACACTGCATCTTTAAACGAATATTAATACCCCTCAgatgcactctcagaaaaaaaacagaactaaaCAGTATCTTCGGTTGTCACTCAAGGGTGTGCCCTCATGGGTACCTctctgtacctttaatatgtatctttcacatGGATACgtggatatagtgtacctttaaaaataatttaaggtataTAAATGGTTATTAGAGTTTTAAAGATGCACTACTTGCAACTTTCTAGGTAAAAGGTATACACTAAAGGTATAaaaaaagatgtacccttgacgTACCCactccagtgacaaggaaaggtacagtttagtaccgtTTCTTCTGAGAATATGTGTTCACTTTGCTTAGTTATTGCTGGTTTAATTGCCTTTGTGTTTGCAAATTCTTTTGCCTTAAACATATTTGCTCACAGCATGGGAAATTTCTGTGCACTGTGCATTGACTTCTGGAGTTTCttcatatgtgtgtatatcCAAAGTGTTGAAGAGATTGAGTTGTATCTGTTTCAATATCAAATGGTTTATCAAAAAACATATCAGAAACATATCACTGTGCTTTTTCTATCCATTCCGAACAGATTTGAGATCATCTTACGAGGACTAACTTTGTGGAAGTATATATtaagttatatatttttgtagaagTGACAATTTATCACAAAATGTTTAGAAGAAAGTATGTTAAGTAAAGGTTTCTTGGGAGGAGACCAGAGAAGAGTAAGCAGATTTGCAGTCTGTTGATGCTGTCACTGAAAATCTGTATCGCAGCTGTTCTATTGTTGTTCTATTAAAGATACTCTTTGcactttaaa

Function

NR:

description
PREDICTED: extended synaptotagmin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920254.2 True 4812 mRNA 0.47 31 18850483 18877346

Neighbor

gene id symbol gene type direction distance location
pa2g4b pa2g4b,LOC108276026,LOC108425565,LOC107737517,LOC107593906,LOC107668344,LOC107591063,LOC107716155,LOC107673109 coding upstream 13543 18829063 ~ 18836940 (+)
erbb3b erbb3 coding upstream 24378 18786766 ~ 18826105 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding upstream 70826 18725277 ~ 18779657 (+)
fam3a fam3a,LOC102798212,LOC106567024 coding upstream 129323 18703452 ~ 18721160 (+)
LOC113530736 ssr4,ssrd,LOC108275523,LOC108425558,LOC106567025 coding upstream 198654 18646708 ~ 18651829 (+)
LOC117599226 LOC108275925 coding downstream 92648 18969994 ~ 18971248 (+)
trnae-cuc_34 NA coding downstream 155571 19032917 ~ 19032988 (+)
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding downstream 213664 19091010 ~ 19117563 (+)
r3hdml r3hdml coding downstream 283867 19161213 ~ 19165261 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding downstream 289955 19167301 ~ 19187959 (+)
LOC113530356 NA non-coding upstream 4136 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 229178 18620249 ~ 18621305 (+)
G256899 bcas1 non-coding upstream 522227 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 770151 18078167 ~ 18080332 (+)
G256852 NA non-coding upstream 772671 18076948 ~ 18077812 (+)
G257127 NA non-coding downstream 14543 18891889 ~ 18936842 (+)
G257196 NA non-coding downstream 188508 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 240531 19117877 ~ 19118533 (+)
G257235 NA non-coding downstream 355657 19233003 ~ 19235261 (+)
G257232 NA non-coding downstream 363766 19241112 ~ 19241568 (+)
LOC113530386 slc26a9 other upstream 1662106 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1725532 17071136 ~ 17124951 (+)
G256046 NA other upstream 2342103 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2454238 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 2523869 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2135 18879481 ~ 18934319 (+)
pkig NA other downstream 321080 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 600956 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 748183 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1513463 20390809 ~ 20398714 (+)

Expression


Co-expression Network