si:ch211-112c15.8


Basic Information

Item Value
gene id si:ch211-112c15.8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10412726 ~ 10420802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920288.2
TAGTCTTTTTATGGAAGAGGAGTTTAGTGAAATCAGCAGTAGAAATGTATGTCTGAGGCTACAATGTTGCAGAATTCAATTATTTGCATACCTTTtggtaatttaatttatttctgtacattttatttggtCAAATGTGTATGCTGAAGTTGAGGTTTCTGTTCATGGATATTTTAAAACTCATTTGCCCGTGACCATGTCGCCAGTGTTTATGATATTTGCTCTGATTGCCGCCTCTCTGTGCCACAGTGGAGACTGTTCAGATAAATGTTCAGAGCCTTTGCCTGATAATCAGATGCTTACCACAACTCAGTGTTTGGCAGGCTATTACAAAAAAGGAAACTGCCCAATTTCAAATACGTTTCTCTGTGAGAAATGTGGAAAAGAGAAATACACAGCACTTAACAACACTCTGCGTGATTGCCTTCCTTGCAATGTCTGTCGTACTGATGAGATTGCTAAGAGTGAATGTACAAATCAAAAGAACCGGGAGTGCGTCTGCAAAGATGGGCTTTACCGGATTCATGTGGTTTCATCTCACACGAAATGTGAAAACTGTACGAGATGCAAAAACTGTAGCACATGCCCTGAATGTAAAGGTAATTGTGAAGTGGGGACTTGTGGGCATGGCCAATTCTTGGATCAAAAAGGGAAATGCCAATCATGTGCCAATCACAATTGCTCGGATAAGTCCTGTAAATCCTTTTGTAACCGagTGCCAGCACCTACCACAACATGGATTTTGGTACTTGTGATCACCCTGTCCATACTGGTACTGCTcggactttttgttcttttccgCTTCATTTGTGAAGCCTGTAGGAGTAGACAACTTTTCTGCTGGGCTCATATAAAGAACGTGAATGAAAGAAACGCTGGTGATAATGGAGTTCTACTAAACTTGCCGAATTTACCTGATCAGCTTGAGGACCAGCTGAATATTCATTTGCCATTGaacatGATCCCTGGAAGCGCAGTGAAAGATCCAGGGACCAGAGACAAACAAAGGCATCTGGACTCGGACTGGACTGGACAAATCAAAGCTCCCCTTATTATAAATGGGGATTTAAAAGAGTTGACCAGGCATGAGCCGGAGCAGGAGATGTGGCCCGCCCCGGTGCTCTACACCATCATCAGACAGGTTCCTGTGCGGCGCTGGAAGGAGTTCTTAAGGTTGCTTTCCTTATCTGACGATCAAATGGAGAGAGTGGAGCTGGAGGCAAGAGGCTCCTATCTGGAGCTGCAGTATCAGATGCTGCGTCTCTGGAGCCAGATGAATGGCGCTTGCCTGGAGAACATCTACTCTACACTACAATATATGGACCTGTCAGGGTGTGCAGAGGATCTGCAGGAGAAGCTGCAGCAGTTGCAGTCCTAGTCCTTGGTCTAGATGAGTCTGTGAATACTTTTACCTCTCAGCAGGCCCTATGCTTTAGTGTTCTCAAATACTCCGAATCTGAATGTGTGACACAGTTGGAAcaatttatttgtgtacattgCACTTATATAACCTACAAGAACCATTGTTCAAACATGGGTTTTTATaatgtatcatagaaatgaaatgaataagaagCAACGTTGTGCTGCTTAGACTTTCGAAATAATGTATTCTTGATTTCTATTATTTGATACATCAGCATACATAAAAAGCATATAAAGAGACAACAGATAAACTGTAACAGTAAATACTTATTGTATATTATACTTGCCACAAGTATTGGGGCAACGCTCCATGAGGACAAATTTAAGCTAGTCTGTGTGAAGCCATAAAGGTTCACCTAAGTACAGGAGATTAAATGTCAGTGGTTTAAGATATATAATGTTACTGTTAGCCATATACCATCTggtgttctttcttttcagtactgtatttttattttttaaaaaaaacccacttcaATCAGAACCGTAGGTTTTAAAAACCATTAAGAGTTTAAGTATTATACATCCGCTGCCACAAATGGTGGGCTGAGGGTGAGGTACAGTATGTGACATTTCTCAAAGTCACGCTGGCACTTTATGTGCATTTAATATGGTATTCATTTGGGGTCATGTTACCTTTGGCATTTTTGTGTCTAACCTTCTACATGCAAGTGTTCTTTAATTTGTGtagaataaatataatgtagcttaaa

Function

GO: NA

KEGG:

id description
K05160 TNFRSF25; tumor necrosis factor receptor superfamily member 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920288.2 True 2138 mRNA 0.41 10 10412726 10420802

Neighbor

gene id symbol gene type direction distance location
ttc34 ttc34 coding downstream 1197 10403177 ~ 10411529 (-)
megf6a megf6,LOC108276135 coding downstream 40030 10342798 ~ 10372696 (-)
emc1 emc1,LOC107593385 coding downstream 260004 10140734 ~ 10152722 (-)
ubr4 ubr4 coding downstream 273435 10092732 ~ 10139291 (-)
iffo2a iffo2 coding downstream 321573 10065107 ~ 10091153 (-)
ccdc30 ccdc30 coding upstream 18042 10438844 ~ 10458808 (-)
arhgef3l LOC108276039,LOC108434749,LOC107712679,LOC107593396,LOC107699573,LOC107565836,LOC107737584 coding upstream 49697 10470499 ~ 10479864 (-)
uba1 uba1,LOC107737583,LOC107699604,LOC107593395 coding upstream 59688 10480490 ~ 10496127 (-)
camkvl camkvl,LOC108275516,LOC106572974,LOC101077320 coding upstream 76916 10497718 ~ 10529717 (-)
adnpb LOC108275936 coding upstream 127588 10548390 ~ 10561471 (-)
G252610 NA non-coding downstream 15986 10396395 ~ 10396740 (-)
LOC117599279 NA non-coding downstream 124042 10244041 ~ 10288684 (-)
LOC117599207 NA non-coding downstream 230838 10179788 ~ 10181888 (-)
G252479 NA non-coding downstream 356643 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 492578 9917429 ~ 9920148 (-)
G252783 NA non-coding upstream 234512 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 289593 10710395 ~ 10711491 (-)
G252856 NA non-coding upstream 358183 10778985 ~ 10779600 (-)
G252859 lrrc23 non-coding upstream 361333 10782135 ~ 10782588 (-)
G252920 NA non-coding upstream 444558 10865360 ~ 10865700 (-)
G252373 NA other downstream 382733 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 641163 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1834126 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2902935 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 3004469 7399793 ~ 7408257 (-)
usp21 LOC108276040,LOC108432659 other upstream 39892 10460694 ~ 10469796 (-)
sinup NA other upstream 215699 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 588661 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 599729 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 1035218 11456020 ~ 11462706 (-)

Expression


Co-expression Network