slc10a7 (slc10a7,LOC107725722,LOC107752196,LOC107694411)


Basic Information

Item Value
gene id slc10a7
gene name slc10a7,LOC107725722,LOC107752196,LOC107694411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23510603 ~ 23521815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920295.2
TTCCTCATTCCCTCTAAATGCGCACTACGTAGGGTTTGAGTGAATGACGTATTCTGACTAAGTAGTGACCTATGTGTCAGGAAGTAAGGGATTTGGGATCGAGCCGTTGTCAAACCGACGCTCCACAGTTGGTTACGGAGGGACCGGGGAGAGTTTGGTGAGGACCGGCGGCGGTGTAACGGGACTCCTCCGGTATGGGCCTGTTAGCGCGCGTGCGGAAGGAATGGTTCATTGTCGGTATCGCGCTCGCGATCGCTTCGGCCAAGCTCGCGCCGTCCGTCGGGGTGAAAGGAGGTCCTCTTCGGCCCGAGATCACCATCACCTACATAGCAGTGTCAACCATCTTCTTTAACAGCGGTCTGTCCTTAAAGACTGAGgagttAGCGAGTGCGTTAATGCACGTGAAGTTACATCTGTTTGTTCAGACGTTCACTCTGGTCTTTTTCCCTGTGGCCATCTGGGCTCTTCTCAAAGTCCTGGCACTCACTGCTATTAATGAATGGCTTCTCAaagggttACAGACGGTGGGCTGTATGCCTCCTCCTGTGTCCTCTGCCGTCATCCTCACTAAAGCTGTCGGGGGAAACGAGGCTGCAGCCATTTTCAACTCGGCGTTTGGAAGCTTCCTGggGATCGTCGTCACAccgctgctgctgttgctgttcCTTGGCTCGTCCTCCTCTGTACCGTTCTCCTCCATCTTCTCTCAGCTCTTCATGACTGTAGTTGTCCCTCTTATAGTTGGGCAGGTGTGTAGGAAGTTCCTGAGGGAGTGGCTGGAGCGGAGGAAACCTCCGTTCGGCACGGTGAGCAGCATCGTTCTGCTCATGATCATCTACACCACGTTCTGCGACACGTTCTCCAACCCCGACATCGAGCTGGACCACCTCagcctcctcatcatcatcttcatcaTTTTCACTGTTCAGCTCACATTCATGTTACTGACTTTCTTCTTGTCTACCAGGAAGTCTTCAGGCTTCACAGCAGCAGATTCTGTAGCAATATTGTTTTGCTCTACACACAAATCCCTCACGCTGGgtatcCCCATGCTGAAGATTGTATTCGCAGGCTTTGAGCATCTCTCGCTCATCTCAGTGCCTCTGCTCATCTATCACCCGGCTCAGATCCTCCTGGGCAGCATCCTGGTGCCGACCATCAAAGCCTGGATGAACACGAGTCAGAAGgccctGAAACTGACCAACCTGCAGCCCATCTGAGAGAATTGTGAATAAATTTACCTCACACTGAAACGTAACGGGACCCAAAGCTGACTTGACCTGCAGTTTTCCGTCATTCCCAATGAAGGATGAGGGACGTTTTCCGGGATGGAGGGATGACCAAGTGCCTTATTGCAACTAGCGGGACCTCAGGCAGCTTCAGTGGCtcgcctctgtctctctctctctctctctctctctctctctctctctctaactacat
>XM_026920296.2
GCTTCCTCATTCCCTCTAAATGCGCACTACGTAGGGTTTGAGTGAATGACGTATTCTGACTAAGTAGTGACCTATGTGTCAGGAAGTAAGGGATTTGGGATCGAGCCGTTGTCAAACCGACGCTCCACAGTTGGTTACGGAGGGACCGGGGAGAGTTTGGTGAGGACCGGCGGCGGTGTAACGGGACTCCTCCGGTATGGGCCTGTTAGCGCGCGTGCGGAAGGAATGGTTCATTGTCGGTATCGCGCTCGCGATCGCTTCGGCCAAGCTCGCGCCGTCCGTCGGGGTGAAAGGAGGTCCTCTTCGGCCCGAGATCACCATCACCTACATAGCAGTGTCAACCATCTTCTTTAACAGCGGTCTGTCCTTAAAGACTGAGgagttAGCGAGTGCGTTAATGCACGTGAAGTTACATCTGTTTGTTCAGACGTTCACTCTGGTCTTTTTCCCTGTGGCCATCTGGGCTCTTCTCAAAGTCCTGGCACTCACTGCTATTAATGAATGGCTTCTCAaagggttACAGACGGTGGGCTGTATGCCTCCTCCTGTGTCCTCTGCCGTCATCCTCACTAAAGCTGTCGGGGGAAACGAGGCTGCAGCCATTTTCAACTCGGCGTTTGGAAGCTTCCTGggGATCGTCGTCACAccgctgctgctgttgctgttcCTTGGCTCGTCCTCCTCTGTACCGTTCTCCTCCATCTTCTCTCAGCTCTTCATGACTGTAGTTGTCCCTCTTATAGTTGGGCAGGTGTGTAGGAAGTTCCTGAGGGAGTGGCTGGAGCGGAGGAAACCTCCGTTCGGCACGGTGAGCAGCATCGTTCTGCTCATGATCATCTACACCACGTTCTGCGACACGTTCTCCAACCCCGACATCGAGCTGGACCACCTCagcctcctcatcatcatcttcatcaTTTTCACTGTTCAGCTCACATTCATGTTACTGACTTTCTTCTTGTCTACCAGGAAGTCTTCAGGCTTCACAGCAGCAGATTCTGTAGCAATATTGTTTTGCTCTACACACAAATCCCTCACGCTGGgtatcCCCATGCTGAAGATTGTATTCGCAGGCTTTGAGCATCTCTCGCTCATCTCAGTGCCTCTGCTCATCTATCACCCGGCTCAGATCCTCCTGGGCAGCATCCTGGTGCCGACCATCAAAGCCTGGATGAACACGAGTCAGAAGtCTGCCATTTTAGTGCACTAAGTCTGCATGTCTTTACCTCCTCCGCCTGCGAGTCCgccctGAAACTGACCAACCTGCAGCCCATCTGAGAGAATTGTGAATAAATTTACCTCACACTGAAACGTAACGGGACCCAAAGCTGACTTGACCTGCAGTTTTCCGTCATTCCCAATGAAGGATGAGGGACGTTTTCCGGGATGGAGGGATGACCAAGTGCCTTATTGCAACTAGCGGGACCTCAGGCAGCTTCAGTGGCtcgcctctgtctctctctctctctctctctctctctctctctctctctaactacat
>XM_026920297.2
CCAAATCCCAAATAGCTTCCTCATTCCCTCTAAATGCGCACTACGTAGGGTTTGAGTGAATGACGTATTCTGACTAAGTAGTGACCTATGTGTCAGGAAGTAAGGGATTTGGGATCGAGCCGTTGTCAAACCGACGCTCCACAGTTGGTTACGGAGGGACCGGGGAGAGTTTGGTGAGGACCGGCGGCGGTGTAACGGGACTCCTCCGGTATGGGCCTGTTAGCGCGCGTGCGGAAGGAATGGTTCATTGTCGGTATCGCGCTCGCGATCGCTTCGGCCAAGCTCGCGCCGTCCGTCGGGGTGAAAGGAGGTCCTCTTCGGCCCGAGATCACCATCACCTACATAGCAGTGTCAACCATCTTCTTTAACAGCGGTCTGTCCTTAAAGACTGAGgagttAGCGAGTGCGTTAATGCACGTGAAGTTACATCTGTTTGTTCAGACGTTCACTCTGGTCTTTTTCCCTGTGGCCATCTGGGCTCTTCTCAAAGTCCTGGCACTCACTGCTATTAATGAATGGCTTCTCAaagggttACAGACGGTGGGCTGTATGCCTCCTCCTGTGTCCTCTGCCGTCATCCTCACTAAAGCTGTCGGGGGAAACGAGGCTGCAGCCATTTTCAACTCGGCGTTTGGAAGCTTCCTGggGATCGTCGTCACAccgctgctgctgttgctgttcCTTGGCTCGTCCTCCTCTGTACCGTTCTCCTCCATCTTCTCTCAGCTCTTCATGACTGTAGTTGTCCCTCTTATAGTTGGGCAGACGCTGAACCATGGCAACACTAACGGGACAAAAACACTGTTCAGGTGTGTAGGAAGTTCCTGAGGGAGTGGCTGGAGCGGAGGAAACCTCCGTTCGGCACGGTGAGCAGCATCGTTCTGCTCATGATCATCTACACCACGTTCTGCGACACGTTCTCCAACCCCGACATCGAGCTGGACCACCTCa

Function

symbol description
slc10a7 Predicted to enable symporter activity. Acts upstream of or within bone mineralization and cartilage development. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC10A7 (solute carrier family 10 member 7).

NR:

description
PREDICTED: sodium/bile acid cotransporter 7-like isoform X1

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K14347 SLC10A7, P7; solute carrier family 10 (sodium/bile acid cotransporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920295.2 False 1443 mRNA 0.53 12 23510619 23521815
XM_026920296.2 True 1501 mRNA 0.53 13 23510617 23521815
XM_026920297.2 False 951 mRNA 0.54 8 23510603 23517484

Neighbor

gene id symbol gene type direction distance location
LOC113530383 NA coding upstream 950 23507539 ~ 23509653 (+)
LOC117599230 NA coding upstream 3625 23505191 ~ 23506978 (+)
LOC113530973 NA coding upstream 16213 23488510 ~ 23494390 (+)
LOC113530553 NA coding upstream 24079 23483725 ~ 23486524 (+)
LOC113530554 NA coding upstream 29833 23477194 ~ 23480770 (+)
otud4 otud4 coding downstream 8679 23530494 ~ 23546073 (+)
anapc10 anapc10,LOC107550153,LOC107564421 coding downstream 41730 23563545 ~ 23568673 (+)
LOC113530971 NA coding downstream 50382 23572197 ~ 23583979 (+)
LOC113530551 NA coding downstream 62964 23584779 ~ 23604485 (+)
rnf150b rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535 coding downstream 83289 23605104 ~ 23617167 (+)
G260011 NA non-coding upstream 36159 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 41546 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 148313 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 161666 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 202011 23307755 ~ 23308592 (+)
G260074 NA non-coding downstream 5613 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 32781 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 305077 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 339827 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 345836 23867651 ~ 23869556 (+)
G259993 NA other upstream 121289 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 126950 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 830061 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1968176 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2271604 21228320 ~ 21238999 (+)
G260415 NA other downstream 510412 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 746762 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 878769 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1103122 24624937 ~ 24636129 (+)

Expression


Co-expression Network