ebp (ebp,LOC107672060,LOC107712744,LOC107657016)


Basic Information

Item Value
gene id ebp
gene name ebp,LOC107672060,LOC107712744,LOC107657016
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11260774 ~ 11264393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920304.2
GTTTATTGGTCAGGGGGTATTGTAGTGGGATGGAACTCTGTGGCGCGATCTGTTTTGCTGTCACTTATGACATGTTTAGTTTATAAATCTCTAGCAATCTTTGGGTAATCCTTTTCGTGCTCTTACCTCTTTCATTAGTTTTAGTCTAGTTTCTCGTTATCTCTCTTGTACATTTTTGTTGGCTAATATTTCTAATTCAAGATGCCAAAGATGGCAGCTGACCCTATAAGTCACCCGTACTGGCCCAGAGACCTGTCCATCCCAAACTACACAGAAAACGAGCGCTCCATGCAGGAGATTGTCATTTTCCTCTTCTCTGTGTCAGGACTGTTGATGTTGTTTGCCTGGACTCTGACGGGAAAGAGCGTTGGAGGAGGAAGACTGAGCACCTGGAGAAGGTTAGCACTGTGCTGGTTTACAGTCTGTGCCTTCATCCATGGTGTCATCGAGGGCTGGTTTTCTCTCTATTACACCATAATTCCATCAGACCAGAGCTTCCTCTCTCAACTTTGGAAGGAATATTCAAAAGGTGACAGCAGATATGTCATAGCAGATAATTTCACTGTGTGCATGGAGACAGTGACTGCGTGTCTATGGGGACCTTTCAGTCTGTGGATTGTTGTGGCCTTCTTGTATAATCATTCCTACAGATTTGTTCTGCAGCTAATTGTATCTCTAGGGCAGCTGTATGGAGCAGTGCTCTACTTCTTCACCGAATATAGAGATGGGTATATGCACAGCGAGTATGGACACCCCATCTATTTCTGGTTCTACTTTGTCTTCATGAATGTCCTATGGATCGTGATCCCTTTTATCCTTATTATGGACTCGTGGTTCCAGCTGAGTAGCACCCAAGCCTTGGCAGACAAAACAGCCCCCAAAAGAAAGATGAAAtagatgaagaagaaaatttaaaaaagggaaTAAATTACTGTGCACCGTTCTAGGTGACATTTGAATGTAA

Function

symbol description
ebp Predicted to enable C-8 sterol isomerase activity and steroid delta-isomerase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within sterol metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in MEND syndrome; X-linked chondrodysplasia punctata 2; and chondrodysplasia punctata. Orthologous to human EBP (EBP cholestenol delta-isomerase).

NR:

description
3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG:

id description
K01824 EBP; cholestenol Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920304.2 True 964 mRNA 0.43 5 11260774 11264393

Neighbor

gene id symbol gene type direction distance location
trnah-gug_14 NA coding upstream 856 11259847 ~ 11259918 (+)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929 coding upstream 32418 11225609 ~ 11228356 (+)
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding upstream 37144 11123944 ~ 11223630 (+)
tasorb fam208a coding upstream 157186 11090187 ~ 11103588 (+)
asb14b asb14b,LOC108276494,LOC108436293,LOC107671999,LOC107560887,LOC107737718 coding upstream 172146 11079277 ~ 11088628 (+)
trnaf-gaa_28 NA coding downstream 3218 11267611 ~ 11267683 (+)
pard6b pard6b,LOC108436329 coding downstream 15436 11279829 ~ 11302003 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding downstream 46576 11310969 ~ 11341526 (+)
bcl2l1 bcl2l1 coding downstream 79960 11344353 ~ 11369724 (+)
nsfl1c nsfl1c coding downstream 165445 11429838 ~ 11437645 (+)
G253151 NA non-coding upstream 13912 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 15302 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 156247 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 221343 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 260954 10998081 ~ 10999820 (+)
G253210 NA non-coding downstream 106310 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 108602 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 197321 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 464647 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 518515 11782908 ~ 11784064 (+)
oard1 oard1 other upstream 23407 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 347178 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 408246 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 480914 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 918346 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 128041 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 205658 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 219026 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 330111 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 627757 11892150 ~ 11900364 (+)

Expression


Co-expression Network