xkr7 (xkr7,LOC108435212)


Basic Information

Item Value
gene id xkr7
gene name xkr7,LOC108435212
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13509588 ~ 13571301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920323.2
gacacacacgcacacaccaacCTTCCCTCGCCTCCACTTCTCCCTTCTCCTCACCCCCTCCTTCTCTTCGCACaaacaaacatggccgccaaaTCGGACGGAGCCGCCGCATCCGCCGTAGCCTCGGCTTCCGCGTGCGCGCGCGATAAGGAGCCCGAGGCGCGTTGTGTCCTCGCGGGGCCGGAAGAGCTCCAGGACGGCTCCCGGCGGCACGCGCTGCTCGACTGCTGCTGGGTGCTCTGCGCGCTGCTCGTCTTCTTCTGCGATGGCGCCACGGACGTGTGGCTCTCGGCCGACTACTACGCGCGCCGCGACTACTGGTGGTTCGCTCTCACGCTGCTCTTCGCCGCGCTGCCCTCCGCCGTGGTGCAGGTGCTCAGCTTCCGCTGGTTCGTCTACGACTACGCGGCGGAGACGGAAGAGGacgcggcggcggcggcggcagcGGCAGCGGCGCGCTCGCGGAGCCGGACGCTCAGGTGCTGCCGAGCATGCATGTGGACCTTCCAGTCCCTCGTGCACATCCTGCAGCTGGGCCAGATGTGGAGgtacaTTCACACGCTCTACCTGGGTGTGCAGAACCACTGGTATCGCCACTGCTACTGGCGCCTGATGTTTGAGACGGCTGATGTGAACATGCTGAGGCTGCTGGAGGCTTTCCTGAAGAGTGCACCACAGCTTGTCCTGCAGCTCAGCATCATGATCCACAGCAAACACATCCTGCCACTGCAGgGTCTCTCCACCTCTGCCTCTTTGGTCTCCTTGGCCTGGATGATTGCCTCCTACCAGAAGGTCCTTCGTGACTCCAGAGATGACAAGCTACCCATGTCCTACAAGGCAGTGATTGTGCAAATGCTGTGGCACCTGTTCACCATTGGCGCACGTACCATCGCCTTTGCACTCTTCGCCTCTGTCTTCCAGCTCTACTTTGGCATTTTTGTTGTAGCTCACTGGTGCGCCATGACCTTCTGGATCATCCAAGGTGAGACAGACTTCTGCATGTCCAAATGGGAGGAGATCATCTACAACATGGTTGTGGGCATCATCTACATCTTCTGCTGGTTCAACGTCAAGGAGGGTCCAGCGCGATGCCGCCTGGCCACATACTACTGTGtgattttggtggagaatgcggCGCTCACGGCCACCTGGTATGCATACAGGGGCCCACACACCTCAGACTTCTATGCCcttatcattgtgtgtgtggtagtaTGCAGCTATGCCTTGGGAACCTTTTTTATGTTTGTCTACTACTGCCTGCTCCATCCTGATGGCCCAGTCCTGGGTTCACAGTGGAGCTGCATGGAGGAAGGAATTGGTGCAATAGGACTCGGAGGTGTGGGGGACCTGGGGACACCTCTGCCCCAACCAGATGTTATCACAAGTCCCCCGAGAACCTTGCAGAGGACTAAGGATGGGGAACGGGAACCAGGGGACAAGGAGAGTTGCCTGCCTGTTTTTCAGGTGAGGTCCATCAGTGTGGCTCCTGCACCTTCTCCCCGAACACCAAAAACTGAAGGTCCTGTTATCCGCATTGACCTGCCCAGGAAGAGCTACCCAGCCTGGGATGCACACTTCATCGACCGTCGATTGAGAAAAACCATCTTGGTGCTGGAGAATACATCGCCAGTGACGCCGCGGATCCAGTACCGCAGCCTTGGCAGCCCCAAAGAGGTGATGGAGTACGAGACTACTGTGTAGTTGCAATTCCTGACCTCCTGTCCGCAGGGACTTCGCCTGTGACTCTGCATCTCTGTGTAGAGAAGCAATGAGGAGTAAGGCAATGCTGGGAGATTCCCACAATACCATTGGTGCTCTaaggcatgtgtgtgcatgggacATGGGACACTGGCTTTGCCTGGAAATTATCATCTGTTCTGAAAACttgtatttcagaaaatacGAGTGGAACATGAGTGAGGTTAGAAGTTAAAGGTCAAAAAGCTCAGTGAGTAAAGAGTTGACTGAAAACGTGAATGACATTCAAGAATAATACCACAATGCCAGCCATAAGTACTGATCTGAAAAGAAGGGTGATACCTGTCCATagatgtttaatgatgatgtgcATGGACGTGATGATGATAAATGTAAGTAAGAGATTTCAGGTGAAACATGTTAAATGCTAGAAGAACTGACCGATCATCTCAGTCCAGGACTGCCCTGGGAACTGCACTGGTCTAAATCCATGATTGTTAGCAACTTGAAAACAGTACCAGTTGTGTATTATATTGCTTATGTGAATGGTGAGGTTAGCCAGGTGAATcatcattgatttatttattgatcgagtagatttatttttttgttactcTGTGGCGATGATAAAAATTTTTATGGTATATTAATGTATACATATAATCTTTTTTCttatatgtatacagtatattggaaTGGTATCACTGTGTAGGTATGAATGTCTTTTGGGTTGTCTGTATGTTCAGCTGGTCTTTGATCATACTGCATTGTTTATCTGtaaaggtaaaagaaaaaaatgggttACCCATGCCCTGATGATGATACATTATGACTAAAATGTAGTTGGAAAAATATTTAGTAAAATGGCTGTCAACAgccctggaaaaaaaaaggaaaactaaaGCAggttggttgtgttttttttcccccataggTTCTCTTGTTTGCGAGACACTGGTTTTGTTGCAAGAGTGTTTGCTGCTCTGTTGGGCAGCATTTGATTTGAAGAGCACAATGTG

Function

symbol description
xkr7 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR7 (XK related 7).

NR:

description
PREDICTED: XK-related protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920323.2 True 2720 mRNA 0.51 3 13509588 13571301

Neighbor

gene id symbol gene type direction distance location
sox18 sox18,sox17,LOC103367850,LOC103467917,LOC103385144,LOC108436137,LOC104941087,LOC107736623 coding upstream 21077 13466509 ~ 13488511 (+)
rgs19 rgs19,LOC108275976,LOC107727031,LOC107666537 coding upstream 78707 13386896 ~ 13430881 (+)
LOC117599301 NA coding upstream 124644 13373774 ~ 13384944 (+)
npbwr2b npbwr2,LOC108410549,LOC107727007,LOC107558229,LOC571123,LOC107559472,LOC107705671,LOC107666655 coding upstream 319906 13168514 ~ 13189682 (+)
pofut1 pofut1,LOC107707748,LOC107747492,LOC107558235,LOC107681402 coding upstream 554547 12949732 ~ 12955041 (+)
ccm2l ccm2l,LOC107666505 coding downstream 3215 13574516 ~ 13587741 (+)
cables2b cables2,LOC107726996,LOC103130974,LOC107666605,LOC103370114 coding downstream 19164 13590465 ~ 13621861 (+)
snx21 snx21 coding downstream 490407 14061708 ~ 14067419 (+)
phactr3a LOC108276101,LOC108438212,LOC107696979,LOC107705714 coding downstream 515774 14087075 ~ 14120704 (+)
fam217b LOC108276482 coding downstream 585873 14157174 ~ 14161605 (+)
G254287 NA non-coding upstream 1805 13507551 ~ 13507783 (+)
G254123 NA non-coding upstream 516376 12993002 ~ 12993212 (+)
G254006 NA non-coding upstream 575287 12933229 ~ 12934301 (+)
G254007 plagl2 non-coding upstream 605222 12903970 ~ 12904366 (+)
G254005 NA non-coding upstream 607211 12899453 ~ 12902377 (+)
G254403 NA non-coding downstream 42037 13613338 ~ 13613537 (+)
G254404 NA non-coding downstream 42646 13613947 ~ 13614240 (+)
LOC117599220 NA non-coding downstream 149983 13721284 ~ 13722885 (+)
LOC113530938 NA non-coding downstream 152064 13723365 ~ 13727382 (+)
G254472 sulf2 non-coding downstream 256383 13827684 ~ 13832691 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 539579 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 655208 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 1123592 12366613 ~ 12385996 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other upstream 1366061 12141472 ~ 12143527 (+)
trim101 LOC108276180 other upstream 1388216 12113622 ~ 12121372 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other downstream 498927 14070228 ~ 14072216 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other downstream 1051016 14622317 ~ 14673952 (+)
rps21 rps21,LOC107666483 other downstream 1545769 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 2638789 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 2660712 16232013 ~ 16326614 (+)

Expression


Co-expression Network