igsf21b (igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570)


Basic Information

Item Value
gene id igsf21b
gene name igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9929268 ~ 9942531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920349.2
ATTCATCCAAGTGACTCGTAATGCCCATCACTTGAATTCGGTGAAAGCTGTCTCTGCGCTAATCCCCACCCGATGCAGCCACCAGCAGCACTTATTCACACCCGATCCTCTGGCAGGAATACAGAGAAAGAGGAACATTTAACCTGAACTAGAGGAAAATGGAGCATTTTGAGCACTTGGCCATTCTAAATAGCGCTACTTCACACCAGGAGGCACAtgtgagatcagggctctgaaTAAAATGGGAACACGGCATTTGATGTTTAATTCATTCACACTACAAAAATGAAGATTCTGCTCACTTTCTTCCTGCTTCTGTGCTCCGACTTCATGGATTCAGTGATGGGCTATTTGACAGTCAGTATCGAGCCTCTCCCGCCTGTGGTCATGGGAGATACGGTGACTTTGAAGTGCAATTTCAGGACTGACGGCAACCTGAGAGAAATCGTGTGGTTTCGGgtTACAGAAGGTGGTAGCTCTAAGCAGAAAATCTTTACTTATGACGCCATGTACAATACCAATTTCTCTCACATGGAGGACTTTCGCAGAAGAGAAGATCTTGTTTACCAATCGACTGTTAGGTTGCCTGAAGTACAGATGGAAGACAACGGGCCGTACGAATGCCATGTGGGAATCTACGACAGGGCGTCCAGAGAGAAGGTGGTCTTAGCATCTGGAAGCATAACACTTGCTGTTATGTcACCCCCGAAATCCATCTCTGTAATTGCAGCTGACCAACCGGCACGATTCAATCGCTACGAGGCTCAAAACTTCACACTCATATGCATTGTGACTGGAGGAAAACCCGCTCCTGTGGTGCACTTTAAGAGAGATGGCGAGCTGATCGAGGTGCTTCCCTCGGTTCAGCCATCAGAGGCAGCTCAGAACAGAGGCTTGCGCTCGGCCAAACGCAGCAGGCCATTGATTAGCCGAGAGCTCGATGACACCAAGCGCCAGAAGTCCCTTTCTCACCTGGAGCCGGACATCGAGCCAATGAGGTTGGACCGGGCTCGTCCTCGCCACAGCCTCACTCCAGGAGCTCTGGGGCAGGAGAGTGCCAGTCCCACTACTGAGATCATCCCAGAGACGGTGGTGAGCAGGGAGTTTCCACGCTGGGTTCTCAGCTCCAGCCCGCTCTACTACTTCAACCACACACAGTCTCAGCTCACTGATGGCACCATGCAGGTACAGGCTATGCTCACCTGGCACCTGAACCCACAGCTCGACAATGATGCGCTGTTTAGCTGCGAGGTCAAGCACCCAGCTCTCTCCATGCCCATGCAGGCTGAGGTCACACTCTCTGCTCCAAAGGGACCGAAACTCTCCATGACTCCAAGCAGAGTAAAAGTGGGAGACACTGTGCGCATCACCGTGGAGGGATTCCAAGTGGGAACAAAGGGGAATGAGGTATTTCCAGAGCCTCTGTTCACATGGACGCGTGTCGGTGGGCTACTGCTGGACGGCAGTGCTGAGAGAGAAGGCAAGGTTCTGGTTCTTGAGAGAGTACCTGCAGAGCTCAACGGCTCCATGTACCGATGCACGGCTGAGAATCCGCTTGGctccaccaacacacacatgcgccTCATAGTGTTTGAGAATCCAAGAATAAAGAAGGAGACACTACACTTAAATGTTGCTGACTCGAGTGGACTTGTATCTGGACCTGCACTCACCGTACTGCTGCTGTTACTGATCCTGGAGTTTACCTGAACAAACACTGATGATCTTTCCTCTCCCTGACATCTTCTGTTCACCTGAAAAGACTTAATACAGACTGTCTGAGCCACGGTTCTGCTCCTATATGAAAAACTGTGCATGTGAGCTACAATATATGAAAGTGCAAAATACTGTGCCACACGCCTGCCATCTAGACCATTATCAAATGGACTTCAGTGTCACCTGCAAGATCTGACCTGTAGATGGCAGTAGAGACTTCTAGACAAACAAATGACATATTTGGTCAGTTCTGTTATGTCTTAGAGAAGATTGTATTCTTATTAAAAAGGGGGGTTTGCTGGTTCATTTAATAGTTCAAGTGTGTGAGTAAGGAAGACACTGTGTTGTAGGGTTTTATAGAGAACCTTTACAGGTTTCcctataaaaaaacacagctataGATTTTACCTTTCAAGTGTGTAGTAAATCCACCCTGCTATTGTCACATacacttaaattttttttctaaccttttaactgtatataaataatacagttcCTTGGATCTaataataaattccacagacccccttgcacagatttatttcatgaacataatccaactattcaaatgtCAGGCTAACTATAGCTCATGgaactttttattcctgaactttccacagaACACATTAAGCTAAAGTTCacattatttgttatttataggcgacttgtttttgagttactgaggtttggatgaATATTAAGTGACCAGTCGAACTggcta

Function

symbol description
igsf21 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and synapse maturation. Predicted to be located in inhibitory synapse and presynaptic membrane. Predicted to be anchored component of external side of plasma membrane. Predicted to be active in adherens junction.

NR:

description
PREDICTED: immunoglobulin superfamily member 21-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920349.2 True 2440 mRNA 0.47 10 9929268 9942531

Neighbor

gene id symbol gene type direction distance location
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding downstream 1138 9922178 ~ 9928130 (-)
lactbl1a LOC108275962 coding downstream 148273 9774483 ~ 9780995 (-)
eif4g3b eif4g3,LOC108434436 coding downstream 163414 9729374 ~ 9765854 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding downstream 265314 9652431 ~ 9663954 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding downstream 325911 9517287 ~ 9603357 (-)
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding upstream 2320 9944851 ~ 9982274 (-)
LOC113530673 rpl22,LOC102779685 coding upstream 56346 9998877 ~ 10002568 (-)
icmt icmt,LOC107703075,LOC107591113,LOC107593379 coding upstream 74960 10017491 ~ 10022500 (-)
LOC117599272 LOC108275587,LOC108275676,LOC108275637 coding upstream 91742 10034273 ~ 10035819 (-)
LOC113530835 LOC108275587,LOC108275676,LOC108275637 coding upstream 96188 10038719 ~ 10040169 (-)
G252331 NA non-coding downstream 9120 9917429 ~ 9920148 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 33743 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 79572 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 220465 9704915 ~ 9708803 (-)
G251963 NA non-coding downstream 430967 9498090 ~ 9498301 (-)
G252479 NA non-coding upstream 112346 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 237257 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 301510 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 453864 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 712783 10655314 ~ 10655522 (-)
LOC117599234 LOC108275963 other downstream 157705 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1350668 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2419477 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2521011 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2605322 7249631 ~ 7323946 (-)
G252373 NA other upstream 86961 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 518163 10460694 ~ 10469796 (-)
sinup NA other upstream 693970 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1066932 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 1078000 11020531 ~ 11025009 (-)

Expression


Co-expression Network