hrct1 (LOC108276455)


Basic Information

Item Value
gene id hrct1
gene name LOC108276455
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17189879 ~ 17194246 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920352.2
GTATCCAATCCAAAGCACAGCCAAACAATGCAGCTCACTGTAGTGTTTGCCTGTCTGGTGATATCAGCAGCCTCTGCTGCTCAGAGTGACTCCACAGTGGCCTGTTATATGGATGCACCCATGCAGCACatgtttttcactgttgatcCTTTCTTGTGCACTCATATTATATACTCCACTGCTTATATTGGTGATGACTTAAGTTTAAAAACCTTGTCACTGGATGTGGACCCTTTCAGCTCCATGCTGAAAATGCTGAAAGACAGGAATCCAGCTCTAAAGATGTTGCTTGGTGTTGGGGTGAAGCAGACAAGGTTAGAGGTGTTGTCCCAGCAGCAGATAACTCTGGATAACTTTATTAACTCAACATTGAAATATGTGAAGAAGAACAATTATGATGGAGTGGAGTTGACATGGTTGGAGAACGACACTGATGAAACTCTCAGCAACACAGAAACCCTCACAAGTTTCATCAAGGAACTAAGACGATGGATTGACCAAGCTGCTAACAAGTCATTGCTTGTTTCTGTGTCTCTTCTGGACCATAGTAACCACATCAGTACTAATATTGACAAGAAAACTTTGTCACAGTATGTTGACTTCATCTGCGTACTGCCACTGAGTCCTAATAATGTACAAATTGACAACACAGTCAAATATTGGCAGGACCAAGTTGACCCCAAGAAGCTTATTCTGGCCTTGCCTGCAATAGTACAACAGCCTCGAAAAAGACAGAGCAGTAGCCAGTCCAGGATTGTGGGCATAAATCCAGAGAGGAAAGTGGAACAAATGAATGGCCCTGGGTTGATTATATCCAAACAGGTCTGCCAGGCCATTAAGAGTGGACAAAAGGAATTAAAGATTTTAACAAAACTTGAGAGCACTCAAAGCCATGGAGAAGACGTGTCATGGCTACTACAGAAGGGGCTCGGTGGTGTTGGGGTTGTCATGTTAGACATTGACAACTTTCTCAACTCTATTTGTCTCAACTGCGCCCAAAATGAAAAGGCAATTCTTGAATTAAATGTGATTACTGGGCATCACCACAGGCATGGTCACCACAGGCATACTAACCATGGGCATAGTCATCATGGGCATGGCCACCATGGGCATAGTCATCACGGGCATAGTCACCATGGGGATAGTCATCACGGGCATGGTCACCATGGGCATGGTCACCACGGGCATGGTCACCATGGGCATCGTCATCACAGGCATGGTCACCATGGGCATCGTCATCACGGGCATGGTCACCATGGGCATCGTCATCACGGACACCATCATCATTGACACCATCACCATGGACATTGACACCATGGGGATGGCCACCATAGTAACAGTCACCATGTTAACAGTCATCACGGTTAGAAAGAGCGTTTGCATCATGGTCATCATTAATTGGTCAAATTGAAGTTTAAAGGCAAGAAAGCCTAATAATCACTTCTACGCAAATAGTGTACCGTGGCACCACTTATATTAATCAAATATCGCATGAGAGTGTTGAATGTTGCTTAAAATAGCATTAAGGCATTGAGACAGTGTTATTAGTTTTGATATCTATTCATGcttttgcaaaataaatgttCCAGTCTTGTGTGTGGAAAA

Function

NR:

description
PREDICTED: acidic mammalian chitinase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920352.2 True 1605 mRNA 0.44 10 17189879 17194246

Neighbor

gene id symbol gene type direction distance location
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 14366 17172192 ~ 17175513 (+)
csrnp2 csrnp2 coding upstream 155603 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 229313 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 275807 16872863 ~ 16914072 (+)
bin2a bin2 coding upstream 342894 16830566 ~ 16846985 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 233056 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 455068 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 545025 17739271 ~ 17746529 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 998951 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 1152529 18346775 ~ 18351473 (+)
G256331 NA non-coding upstream 81141 17106717 ~ 17108738 (+)
G256322 NA non-coding upstream 131382 17058192 ~ 17058497 (+)
G256319 NA non-coding upstream 134788 17054866 ~ 17055091 (+)
LOC113530783 NA non-coding upstream 138948 17048077 ~ 17050931 (+)
G256239 NA non-coding upstream 266476 16922911 ~ 16923403 (+)
G256405 NA non-coding downstream 3433 17197679 ~ 17197916 (+)
G256408 NA non-coding downstream 46642 17240888 ~ 17241933 (+)
G256425 NA non-coding downstream 72264 17266510 ~ 17266732 (+)
G256426 NA non-coding downstream 87074 17281320 ~ 17282500 (+)
G256448 NA non-coding downstream 134139 17328385 ~ 17328590 (+)
LOC113530386 slc26a9 other upstream 1502 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 64928 17071136 ~ 17124951 (+)
G256046 NA other upstream 681499 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 793634 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 863265 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1685235 18879481 ~ 18934319 (+)
pkig NA other downstream 2004180 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2284056 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2431283 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 3196563 20390809 ~ 20398714 (+)

Expression


Co-expression Network