rap1gap (LOC108276112,LOC108434374,LOC107716101)


Basic Information

Item Value
gene id rap1gap
gene name LOC108276112,LOC108434374,LOC107716101
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9517287 ~ 9603357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920399.2
ctcactcacacgctTGGCCACTCTCGGTTCAGTCCGGTGAGACTGACATAGTGCCTCCATCTCAGTGCGAATCTCTATTACCGTCTGTGTGTCTCTAATGCTGAGCTCAGCCTATTTACCATGATGCCTCAAAGAAAAAGGAGTTTTACTTTTGGAGCATATGGAGGAGTTGACAAGACATTCTCCAGAACTCGAAGCTTATGGAAACCCCGCTCCTGTCCCCCATCTGACACACTCTCAGGACTCACAGGACGCCCTCACTTTCTGataagGAAACAGGATGGAGGAGAGCCGCGTATCTCTAGCACTCTAGACGCCACActgctccaggctcccctgcccTACACTGCCCCTGCATTCCTGAAGACTACTGATTTATTTGAAATGATTGAAAGAATGCAGAGCAACAGAATGGATGAACAGCGGTGTGCCCTTCCTCCACCCCTTAAAactGAGGAGGACTACATCCCATACCCCAGTGTTCATGAGGTGTTAGGCAGGAAAAGCCCTTTTCCTCTGATCCTGCTGCCTCAGTTCGGAGGTTACTGGATTGAAGGCACCAACCACGAGCTGAGCAATGGAAATGACCTGGATCAACTGCTGTCTCCTACATCCCACATCAAGCTGGAAACCAACACTACAGCCAAGATCTACAGGAAACACTTTTTGGGAAAGGAGCACTTTAATTACTACACAATGGACAGCGCTCTGGGCCACCTGGTCTTCTCAGTTAAATATGAAGTGATTGGGGACCAGGAGCACCTCCGTCTGATGTTAAGGAGCAAATTGAAGACATATCATGACGTGATCCCGATATCATGTCTGACTGAATTCCCCAACGTTGTCCAGATGGCCAAGcttgtgtgtgaggaggtgaaTGTGGATCGCTTCTTCCCAGTGCTTTACCCAAAGGCATCGAGGCTTATTGTGACTTTTGATGAGCATGTCATCAGTAACAACTTCAAGTTCGGAGTAATATATCAGAAGTTTGGACAGACGGTTGAGGAGGAGCTGTTTGGAAATAATGAGGAAAGTCCAGCATTTGTGGAGTTTTTAGAGTTTTTGGGTCAGAAGATTGAGCTCCATGATTTCAGAGGTTTTCGGGGAGGCTTGGACGTGACACACGGACAAACAGGCACAGAATCAGTCTACTACAACTTCCATAACAAAGAGGTTATGTTCCACGTATCCACCAAGCTCCCCTACACTGAAGGTGACACTCAGCAGCTGCAGAGGAAGAGACATATTGGAAATGACATTGTGGCCATTGTGTTTCAAGAGGAGAACACTCCATTTGTGCCAGACATGATCGCATCAAACTTCCTGCATGCCTACATCGTGGTACAAGTGGAGAATGCGTGTTCTGACAATGTCCTGTACAAGGTGTCAGTGACTGCGAGAGATGATGTCCCATTCTTTGGACCGGCCCTACCTGATCCTGCCATATTCAAGAAAGGACCAGAGTTTCATGAGTTTTTATATACAAAGCTAATCAACGCCGAGCATGCCTGCTACAAAGCTGAGAAGTTTGCCAGACTAGAGGAGCGTACTCGAGGAGCTCTGCTGGAGACGCTGTACGAAGAGCTGCATATCAACAGTCAGGCCATGATGGGGCTCGGCGGGGATGAGGAGAAGCTGGagaatggaggaggaggaggaggctTCTTCGAGTCTTTTAAGCGGGTGATCCGCAACAGGAGCCACTCTCTGGATGCCATGAGTTTCAGTATTGGGAAGCGCGCGGTCTCCTCTAGTCACAGCGGCAGTTTTacccacaacaacaacaacgatcAGCTGCACTCACCAGAGGCCCACAAATACGCTGGGATATCATTGCTTGTTCCAGGGAAAAGTCCCAGTAAATACGGACGCCGCGGCAGTGCCATAGGGATAGGAACAATAGAAGAGTCTCTGATCATTCCTGGGAAAAGTCCGACGAGGAAAAAGTCTGGCCCATTCAACTCTCGCAGGAGCAGTGCCATCGGCATCGAGAACATCCAGGAGGTGCAGGAGAAAAGGATTGCTGCGCTCTTgtcagaggacaggacagtgctctgtgtctctctgcccAGCGTCAGTCTCAGGAACGGCAGACTCATCATGGATTCCTCCAAcaGCAGGGAGAGTTCTCCGAGCACACAGAAGACTCCTGACAGTGGACACATATCACAGGAACCCAAGTCTGAAAACTCGTCCAATCAGAGCTCACCTGAGGTCCTTGTCACTAAGAACAGcTCAGCCATGTACTTCAGAGCTGCTTCTATCCCTGAAGCACATGACTTGTCACGCTCCTCCTCGAATGCGAGCAGCTTTGCCAGTGTGGTGGAGGAGAACGAGACCGAGGCCACTGAGGACTACGATACAGGCATGGAAAGTCTGTCATCAGCAGGAACACCACACAAGCGAGACTCATTCACCTACAGCACATGGCTGGAGGACAATGTAAACAATGTCAGTACCACCAGAAGGGGAAGCTCTCCTGGTACAGGCAAACCTCCCGACGGTGGTAAAGGTAATGAGCAGAACCGGACAGACATCCGCATCAGACTAGATCGACCGCTTGATCATAAGTCTACATCGAACTGCTAGCCTCTCTCTGATCGCATCATGGATCTCCATCAACAGCTACCATTTCAGCATTCCTATAAAACTCATGAGCTCGGGTTTTCACCgtgactgctactgctgctgaagatgacgatgaagatgatgaaaatAGCTCCAGCCTCCACCACAGTGACAGATGACAGGATTGTGATTATGTACATAATAGAGTGACTATGCCCTGCATCAGACTACTGCTTTACTGGTGGCCCAGTGAAGGaccgagtgagagagagagaggcgggAATGGGGGGCACAGGCTGCACGGAGAGACCTCATTTGCACTGCATCACTTTCCTTTTCATGGTGAATTTCTCATCTGGTTTCCACTCCGCTGAATTTGGCCTGTTCTGCTCTATCCTGAGTACCGCTTCTAGTCCATGTAGAAAATCAAGTGGTATTTTTGCCTGTTAAGCATAGACTGCTATCTGTTTCTCATCTTGGTGAATAGCTCCTAAAGCTGTGCCATGTTGAGCTCCAAATATTCCAAAAAAGCCGCATGCAGCAGGAGCTTATTCATCAGGTAAAGCTGACTGGAATGTTTCTCAGACATTGGCATGggcatgctgttttattttatttttattattattgttgttattgtctgATTTTTGCCTTGGGTAATCACTACTGATACTAATATTGTGTTACACCTCCAGAAAAATGTACAGTCAAACATGCATTTCTATATAAAACTACTCGTCTACAATATCATTCCCAGTCTgtcaacaaaattaaaaaaaagactgagttATATTCAGCTAgtatatattctttaaatagAAATTGCATAAAAATGCCTTACTTAACCCTCAAACAGGTGATTCAAGCTAAGTAGCTCCAGCATTCATACATGATTAACTGTGTTGTTATAAACCTCATATGTCCTGTCTATAGTGAGAAAAGCTCCTTTTATTGAGTCTTGGTTATTTCTGTGCAAGGGGCGTTCACCTTAATTATATACAACACAGACAACATGATATACAACAGACTGTGAGTTCTTTCTGTAACGCGCTCACTTGAGTATAAAATGGTGTCTTGGTTCTTTGTTATTGTGCTTGGACCCTAGATCTGTGAAGAATGCCACTTTAAGGTTTAACATCTGCCTAAAATATTCAGGCTTTCCCATTCGAATCCATGCCACTACAGAAATTGTCATAAATGGTGAGAATTTTTATTTCAACTGAAGCTAAAATATgtgttgtaaaatatatttttttccagacataAAGATTAGTCTATTTAGATCAACTCTATATAAGCATAGGCCTAAACCTGACACTGTCTTTGAACCTCAGTAATGCCAAAAATCGCTGATCCTGTGTCcttatttaaaatgtagataTCTCTGAGAATCACTGAGAAAGGATTACAGTGCATGTGGTTGCCTTACTGTAAGGAACACCGGCAATCAGGGAGGATGTGAGGTAGCTGAAGGTATAAATGTTGAGTAAATATTCAAGTATATatgttgttttataaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K17700 RAP1GAP, RAPGAP; RAP1 GTPase activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920399.2 True 4100 mRNA 0.46 29 9517287 9603357

Neighbor

gene id symbol gene type direction distance location
gpr157 gpr157,LOC108434350 coding downstream 80123 9431703 ~ 9437164 (-)
LOC113530597 LOC108432612,LOC108276125,LOC108236859 coding downstream 92387 9417550 ~ 9424900 (-)
eno1a eno1,LOC108434336,LOC107703060,LOC107591100,LOC107716106,LOC103038459,LOC107593367,LOC107737561 coding downstream 110827 9395118 ~ 9406460 (-)
rerea rere,rerea,LOC107737560 coding downstream 129506 9221042 ~ 9387781 (-)
samd11 samd11,LOC107737557 coding downstream 348529 9110411 ~ 9168758 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding upstream 49074 9652431 ~ 9663954 (-)
eif4g3b eif4g3,LOC108434436 coding upstream 126017 9729374 ~ 9765854 (-)
lactbl1a LOC108275962 coding upstream 171126 9774483 ~ 9780995 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding upstream 318821 9922178 ~ 9928130 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding upstream 325911 9929268 ~ 9942531 (-)
G251963 NA non-coding downstream 18986 9498090 ~ 9498301 (-)
G251955 NA non-coding downstream 27424 9488270 ~ 9489863 (-)
LOC117599283 NA non-coding downstream 65119 9449297 ~ 9452168 (-)
G251924 NA non-coding downstream 77651 9439347 ~ 9439636 (-)
G251922 NA non-coding downstream 78476 9438501 ~ 9438811 (-)
LOC117599281 NA non-coding upstream 101558 9704915 ~ 9708803 (-)
G252265 NA non-coding upstream 243759 9847116 ~ 9849696 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding upstream 291927 9895284 ~ 9895525 (-)
G252331 NA non-coding upstream 314072 9917429 ~ 9920148 (-)
G252479 NA non-coding upstream 451520 10054877 ~ 10056083 (-)
ttll10 ttll10 other downstream 938687 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2007496 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2109030 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2193341 7249631 ~ 7323946 (-)
rps26 rps26,LOC103039794,LOC108433306,LOC100304575 other downstream 3209414 6304844 ~ 6307873 (-)
LOC117599234 LOC108275963 other upstream 164890 9768247 ~ 9771563 (-)
G252373 NA other upstream 426135 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 857337 10460694 ~ 10469796 (-)
sinup NA other upstream 1033144 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1406106 11009463 ~ 11015666 (-)

Expression


Co-expression Network