pard6b (pard6b,LOC108436329)


Basic Information

Item Value
gene id pard6b
gene name pard6b,LOC108436329
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11279829 ~ 11302003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920483.2
gtgtgagtgagagagagagagagagagagagagacagggtgggCGGGGACAGGAGAGTTGAGGAACACACTGTATTGACAGCGGCTGTCTCCACTATTCCGCTTGGAGGACAACAGAAAGTGAGACGTAGGGAGGCTCGTGTTCACCTGGATTACGCGGAGAAGGAACTTCTGGCTGTCGAGTTGGAGGAGGCGGATGAGTGCAGCAGCCCCCGggggcgagtgtgtgtgtgtgtgtgagtgtgtgtgagtgctgcGGCGGGCTCCGTTTAGCGAAAGATGAACAAAAACCACCGAGTGCCGAGCAACCGATCTCTGAGCGCCGTGGAGGTGAAGAGCAAGTTTGGAGCAGAGTTCCGGCGATTCTCTCTTGACCGCTCCAAACCAGGCCGCTTCGATGAGTTCTACGGTCTTCTGCAGCATGTGCACCGTATCCCCAACGTGGAGCTGCTGGTGGGCTACGCCGACATCCATGGAGACCTGTTGCCAATTAACAATGACGACAACTACCACAAGGCTATCACCACGGCGACGCCCCTGCTCCGCCTCTTCTTGCAGAGAAAAGAGGAGGCGGACTACTCCACATTTGGCACCAACTCTTTGACGCGCAAGAAACCTCCCCTTGCTGCAGTGCTCCTGCGCCCTGATGCAGGCAGGAAGAAGCCAGCAGTAGTCATTAGCCTTCCCCGAGACTTCCGTCCCGTCTCGTCCATTATCGACGTGGACGTCTTGCCTGAGACACACCGGCGAGTGCGCCTTTACAAACACGGCCAGGAAAAGCCGCTGGGCTTCTACATCCGAGACGGCTCGAGTGTGCGTGTCACGCCGCACGGCCTGGAGAAAGCACCAGGCATCTTTATCTCACGCCTGGTGCCCGGCGGCCTTGCCGAGAGCACGGGGCTGCTTGCTGTCAATGACGAGGTGCTTGAGGTCAACGGTATCGAGGTGGCCGGGAAGTCTCTGGACCAGGTCACAGACATGATGATCGCAAACAGCCACAACCTCATCATTACGGTGAAGCCAGCTAACCAGCGCAACAACGTGGTGCGCCACAACAATGGTGGAGCTGCATCAGGCAGCTCGGGTCGATCCTCCGATAGCGGAGCCAGCTACTACAGCTACACGACCCCAGGTGCCGTGGCGACAACCCCTGCGCACATCATCCAGAACTTCCATCCTGAGGAAGTAGACAGcgatgaggatgaagaagacTTGGTGATCGAGGCAGGTGGTGATAGCAGGCTCGCGCCCGCGTCAGGGACAGAAACTAGCTCCAGCATGTCCACCCTGCCCAGATACAAGCCTCATTTTGACCTCCGAAATTCCAATGGGACCTTTGAGCCTTCTGTTATGAGCAGTACCAGCTCAGGGTCACCGAGGGGCCCCGATAGAGGTGTGCAGACGCGGAGCCTGGAAGAGGACGGCACAGTGATCACACTCTAGAGACAATAGATACACAGAGACATcaacaacagacacacacagctgacatttacacactcgatatgctgtatatatgcagtatataaaaATGATCCTAACCCCATTATCCTCACATAGGCAATTATTCACAAACACAATATATAATTTACAGACATACACCCCATCATAGGCAGCACCAACATTGTCACACCAACAGACATACACACCAACATTGTCTCTCGTGCCATAGGACTAACTCAGTGACTGTCTCTACTCTGTAAGATGACTGAATCTACTCCTTTAAAAAGAGCATCTCTTTTTTTGGAAAGGTGCTTCAGAAACTCCACAACACAGCACTTCTCTTTAAGcacagatcttttttttcctgctggaGGGCCTTCTACACGCTTCCCTCCATAACTAGGAGCACAATAATAAGTAATGGATTAGACTTGATGAGTGTGAACTTAGGGATAATTGCACATGTTTGCAGGTTTTTCCTGCCTGTGGAACTACAAAGACAGAACTCTCTGAGACACAATATCAGTGATGACAATCTGTTTTAATGCTCTCTCTGGAGTCATGTGACTCTGGGATCTGAACCACAAACAAATTTCAATGACTTTTGCGCTTCACAAATAGCACAGTAAATGCTCTACGGTTACACTGTTAATTGAGGAGGAAGCTGTATGACACTAGTTCAACTGTCATGTTTGCTTCCTGGTGTGCTTTGTCAAGTTTTTATTGAACAATGACTAAATTTAGGATGCTTCTAAATTTTTCTGTGTACAAGCAAATTAGCTTTTACCTACATTGATTGGGAGATTTACTAGGCCTGTAGTGGGCCACTGCTAATGCTTTTAATCATTGCCAAGGAcccaaaaaaatcatatttttgtagcagatattttaatttttttttaccctttatGTTTATGACAAGGGCTGTCTCCCTGCTCTGTGGCATGTGATTTATGTGATGTGTTTTTCCTTAAAGATGTAAACAACACCAGAACCTGATACATTGTTGATAACGAACATCGCAGATAACGAACACATCCACTCATTTTTACTGTACACTCTGAAGTGAAGTGTTTCATGTATGAGGAGTGTGTTAATGCCCTCTTGGATTAATACACAGTTCGGGCTATTAGATATACCATGGTTTTAAACCATCCCCACCCAACCAATAGTGGTACATAGATACAGGCTGCAGAAGGAGCACTTTTGTAACAACCTTTTTCCAGGTGACGTGCTGTGACTTGTCAGGGGATGAACTTTGAACTGAGGTCTGACCCACAGTAGATCACCATTGAGCCTTTCTGTAGTTACAACTGAAGCAATGTAGATATGAACACGGGTAGTGGTTTGTAGGCCTATGTGATGTAGGCATTGGCTGCATTATTCTTATCTAATAAAGATATGCTCCACAAAGGCACCTTCTatcatgaaaaacacacacctgtacttGTTTTCCATCCCTGACTCACCTTCTCAAATGTTGCACTGCTTGGTGCTAAGGCAAGAGTCTCCCAACATCTAGGTGGACAATAATGACTGAGTATGTTTCCTCTAATGCTTCTGACACTCTATGGCTTATGTATAAATGTCTATAAATGAGCCTACACCATAAAAAAACGATTAACCTACTACCCGGATACACTGCTTCAAGTTAACATTATTATTGCTGATACATTTGCATTAAATCTGTATGGATGGCCCTTTTGTATACTCAAAggcaatataataaaaacactaGATTTTATATTAATGGATGTACTGAATATACATCTTGAATGTGATGATATTTTGATAGACTGCTGTGCCTCATGTACTCTTAACCAGTGTTCTTGGATCTTTATCCATAGTGTAGTACATGTAGCTTTATCCTTCTCTCTTGTACTCTGATGAGAATCAAAAACACTGGATGACTGTGACCAGAACGCATTCCTATCCACTTTCTTCCCCTCATACATAGACACTTTAATACACTCGCCATTACAAAGGCTTGTTATGGTACATATACTGTAGTATGACAGGGTTGTCCTCTTATCCTAGAATTCCAAGCTGTTCTTCATTAAAACAGGCTCAAATGGCTTGTAGGAAgcattgttaattttttttttgctaaccactacactacactacgctTGGGATTGTAACCACAgtgactgtatttattttctaatcaaCTCtgattttttctctctctcttctagtGTTTAGCGTACATgtatctcttttctttcttcacagAGTATCATCTCCATAAACTGAGTTTGGggccactttttatttttattttttttaataggctTATATTTGTTATAGTGCATATATTGAAGATAACATGCTGTTTTCCATACTgtgaatttatttcatttctggaGGAGACCTGAATGAATCGGAGACCACCTACTAATgggctttttttgtgtgtgtcaactccttttgtttctttttgatAATGAGCAATGATTATTTTGCTTGCTAGATAAATCCTAAGGTATAGATTTGTACTGAAATGACCAGTATTTTCATAAtgctatatactgtaaatttgtatcacattaattaaactgtttaaaaggatatatactatattaagACATAGGTGCACATGTATACATTAGTCTACAGGCTGGATGAAATAAACTAATGTGTAGAAATGGC

Function

symbol description
pard6b Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to act upstream of or within cell division. Located in apical plasma membrane. Is expressed in otic placode. Orthologous to human PARD6B (par-6 family cell polarity regulator beta).

NR:

description
PREDICTED: partitioning defective 6 homolog beta

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920483.2 True 4094 mRNA 0.44 3 11279829 11302003

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_28 NA coding upstream 12146 11267611 ~ 11267683 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 15436 11260774 ~ 11264393 (+)
trnah-gug_14 NA coding upstream 19911 11259847 ~ 11259918 (+)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929 coding upstream 51473 11225609 ~ 11228356 (+)
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding upstream 56199 11123944 ~ 11223630 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding downstream 8966 11310969 ~ 11341526 (+)
bcl2l1 bcl2l1 coding downstream 42350 11344353 ~ 11369724 (+)
nsfl1c nsfl1c coding downstream 127835 11429838 ~ 11437645 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding downstream 142391 11444394 ~ 11453985 (+)
zgc:158296 LOC108275955 coding downstream 207499 11509502 ~ 11512493 (+)
G253151 NA non-coding upstream 32967 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 34357 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 175302 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 240398 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 280009 10998081 ~ 10999820 (+)
G253210 NA non-coding downstream 68700 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 70992 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 159711 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 427037 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 480905 11782908 ~ 11784064 (+)
oard1 oard1 other upstream 42462 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 366233 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 427301 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 499969 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 937401 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 90431 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 168048 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 181416 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 292501 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 590147 11892150 ~ 11900364 (+)

Expression


Co-expression Network