zgc:194282 (srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891)


Basic Information

Item Value
gene id zgc:194282
gene name srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12168527 ~ 12185778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920536.2
GCGGGAGTGATGATACGGGTGAAAGGCGCTGTATGTCCCTCATCGCGCAGGATGCTCTTTGCGGGTAGTCACCTCAGTTCCTCTCTGCTTATCTCTGCGTCTCGTGCAGCTCACGTGCGGCGCTATGTTTCCGCGTTCCCAAAGCGCGCTCATTTCTGCGCTGCTGATCCATCCCTACACCAAACCGGTTTCACCTGATTCTCCGCTCCGCTGGCTCGCATAGCGCTGACTGCACTACACAAAGAGGCCGAGGGCCACCTTACACACCTATAACGAGCCTTAAATGAAGGAGAAGGACGCGCGGGATCTGTGATCGTGCGCGCGCCAGGCTGCGGTTGATCGTGGTCGCAGGACCGTTTGTTGACGTGCGCCGTCGGAACCAGGGTGGAGGGGGTGGAGGGGGGAGGAAGTAGGAAGGAAAGACTGCGGGGGGAATGGAGGAGTGCTGCCGAACGTGCATGCCCTGTCTGAACCGCTTGTGGAACTGGTTATGGCCTGACCTGCGCTATCCGAGCGTCACTCCGGCGGCGGAAATCCGCACGGTGTCGGGGGAGCTCCGCGTGCCGCAGCCCAAGAGGCGGCCTGCGCAGCTTTACGCCGCGCTCTACGACTTCGAAGCCCGCAGCGAGGAGGAGCTCTCGGTCAAAGAGGGAGACAAGCTGTCGGTCATCGAAAAGCGAGGGCAGTATGTGCTGGCCAAAAAACTCACAGGAAGCCTCGAGTCCGGCCTGGTGCCGGCCAACTATATCGCGCTGCTGCAGGACGAATTCGCTAAATACAAatggTACTATGGGAacataaacagacagaaagctGAGAAGCTGCTTTTGGCTCCCCAGAATAAAACAGGTTCTTTCCTGGTTCGAATCAGTGAAAGTCACAGTGATGAATACACCATTTCAGCCAGGAATGAAACCACTGTCTTCCATTTCCGTATCCATCGTTCTTCAGTCGGTGCTTACTTTGTGTCTGATAAGCTCTCCTTTGCCACTTTGGATGAGCTTATCAGGTACTATCAGAACAACCCCAGAAGCCTGGGATGCCCCCTGGACCAGCCGTGTGTACAGCAGAGGGAGCTGTTTGATATGGAGCCATGGGAGAGGCCGAGAGAAGAGTTTAAGCTGGTCAGGAAACTGGGGGAAGGGCATTTTGGCGAGGTATGGGAAGCTGTTTGGACTACTAAGAACCAGAACGTGGCCATTAAAATGTTGAAACAAGAGGACACCAAACTGGACGAGTTTGTGAAGGAGGTCCATGCACTGAAAAACCTGCACCACCCAAAGCTCATTCAGCTGCTCGCGCTGTGTACACGGGGAGAACCTGTCTACATCATCACTGAGCTCATGGCCAAAGGCAGCCTCAAGTCCTACCTTGCCACCCCAGAGGGACAGGTTTTGACCTCAGCTCATCTGATCTACATGGCTGGTCAGGTTGCAGAAGGGATGGCCTACTTGGAGGACCGGCACATTGTCCACCGAGATCTGGCTGCCCGAAACATCCTGGTGGGAAGTGACCTGGAGTGTAAAGTGGCTGATTTCGGCTTGGCTCGTATTATAAAGGACAGCGTGTACACGGCCAGTAGGAACACTAAGATCCCTGTGCGGTGGACAGCTCCTGAAGCGGCTCTGCACCAGCGCTTCTCTGTTAAATCTGATGTCTGGTCCTTTGGAGTGCTGCTCTATGAGATGATGTCACGGGGGAAGATGCCGTATGAGGGTAAAACCAATAAGGAAGTGTTGGAGATACTTGCTTCAGGTTACAGATTGCCATGTCCAAGTCGCTGTCCTCCCAATATCTACCGCATGATGGTGGAGTGCTGGGCAGCTGAAAGCTCCAAACGACCGTCATTCCATGCACTGCACAGCCAACTGGACAACATCTACTCCAGAATCTACTACAAAACCATTGAGGTGTAGAACCTGAGTCTGATGAGGAGCACAAAAAAGCCACACAGGAGAGCAAATCAAGGGATTTACTGATGGTTTACTGATGCTGGTTCAGATAACAAACTGATGGCCTCTTCCTGCCAAGACTGTATTCatgaatgatgtttttttatCATGACATGTGCAATAATGTAAAGGAACAGAAGAGTAGAAAAGACCTACAGCAGTGGCATGCTCAGTTGCTGGTCAATGATCTGTATGTGATATGCATTGGATTTTGGGTTGTGATCCCTAACAGTGTTCAGCCTGTGTTGTGCTCCACTGCTGGCCACACAGAGACTCAAGTTTTAGGATCAGTAGTAGCCTAGCTAATCAATTTCTGCTATCCAGTGAGTGTTTTGTTTACCAGTGCTTCACTTGCCAACTGTGGACTTTCTCCCAATGAACAAAAAAAGGTGGAGAGAACTAAGACTGTTACAACTAATGGAGTATCCGAGGAGGTTTACTTCAGACCTGTTAAATCtctgctgcaaaaaaaaaaaaaaaaaa

Function

symbol description
srms Enables protein tyrosine kinase activity. Involved in peptidyl-tyrosine autophosphorylation. Located in cytoplasm.

NR:

description
PREDICTED: tyrosine-protein kinase SRK3

GO: NA

KEGG:

id description
K08895 SRMS; tyrosine-protein kinase Srms

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920536.2 True 2435 mRNA 0.52 8 12168527 12185778

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_33 NA coding downstream 27354 12141102 ~ 12141173 (-)
gid8b gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441 coding downstream 80806 12083985 ~ 12087721 (-)
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding downstream 84994 12068589 ~ 12083533 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding downstream 236032 11926906 ~ 11932495 (-)
prim1 prim1,LOC107741309 coding downstream 252543 11907926 ~ 11915984 (-)
nol4lb nol4l,nol4lb,LOC107563666,LOC107672011 coding upstream 2016 12187794 ~ 12285570 (-)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919 coding upstream 120375 12306153 ~ 12316352 (-)
ube2t ube2t coding upstream 209666 12395444 ~ 12400748 (-)
zgc:194242 LOC108276244 coding upstream 215687 12401465 ~ 12406721 (-)
LOC113530803 LOC108276244 coding upstream 226296 12412074 ~ 12415966 (-)
LOC113530483 NA non-coding downstream 17582 12143633 ~ 12150945 (-)
G253538 NA non-coding downstream 263841 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 390594 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 410597 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 424369 11743950 ~ 11744158 (-)
G253749 NA non-coding upstream 31646 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 206585 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 420763 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 475466 12661244 ~ 12709317 (-)
LOC117599211 NA non-coding upstream 506567 12692345 ~ 12714080 (-)
ptk6b LOC108276246 other downstream 732 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 309181 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 599924 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 705821 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1143518 11020531 ~ 11025009 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 711696 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1065362 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1943185 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2513494 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 3072707 15258485 ~ 15317365 (-)

Expression


Co-expression Network