si:dkey-109j17.5 (LOC108276432,LOC108436326,LOC103033727)


Basic Information

Item Value
gene id si:dkey-109j17.5
gene name LOC108276432,LOC108436326,LOC103033727
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11247652 ~ 11254606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920565.2
CTTCACTGGGTACTTCCTGCTGTCCAGAACACtggcacgcgcacacacatacacgcacagagagagagaaagagagagagagagagagagagagctgtttaCAGGCGCCAGATGTTAACCTTGGTGTGTATCGTCTGATTCTGTGGGAATACACAGCGTCTTGAAGGCTAACTGCACACATTTTGCCACAATGCTCAAACGATAGGTTTGGAGTAACATTAGCAGGACACACACTGGCAAGCATCAAGCGTGTTGTGATGTAGCACAGCGGTGAAGCTACAGAAGCTCATCATCAGCACTGGCTACTGAAGCACAACGCCATCACGCAATTGTGCACAAGCGCAGAGCAGATAGCTGTCGAAACAGTGTCTCGTTGCTTCAGTGTCTGAGGATTTCACATTCCCAGATGGCGTCAAATTCTCGAGTGTCTATTCTGGATTACTTCAACATTGTCTTTGAGGGCGAAAATGGCAAAATTGAATCAAACTGCAAAGCTTGTGGCACAAGGATCCAGGCAAAGCGGACAGTTACCTCTAACTTCGTTACACATTTAAAGCGTAAACATCAAGCAATGTACAATGagtttttaaggaaaaaagatGTCAAAAGAGAGGCCTATTCTTCTGGGGCAGTGCAGTCCTACACACCCGTAAGTGGGGCCAGTCGAACAGCTTCTCAGAGTGGGGCGGGAACAACCAAATTTGACCGGAGCGATCCACGACAGTCCCTCATTTCTGAAACAATTGCCAAGATGATCGTCCGCGACCTGCAACCTGTGCAGATTGTAGAGAATGAGGGCTTCCGTGAGCTACTTAAGCTCCTTGAGCCTCGTTACGTCCCAGAGCCGAGCCATTACATACAACAGCAGCTTCTCCCGGCTTACAGCTACCAAGTACAGCTAGCGACCAAGCTGGCTCTCTCAGGAGTCGAGACCTGCAGTATCACCCTGGACCTGTGTACGAGCAATGCTGTGTCTGTCAACAACAGTTCTGGCTACTTGGGCGTGACATGCCATTTCATAACCCCAGACTGGCACATCAAATCCACGCTATTATCATGTATTCCTCTCCAAAATTATAGGGACACACAGCGCATGCTCACTGAGTTCGACGAGATCTGTCATGTTCATGATATCTCGGGTAAGGTGTTTCGCATCGTTGCTGATCCCTCCCCTTGTGAAAACCGATCTACCTTCCGCCTGCCTGGTTTTTATCTCCATGGTAATGGTATTGTggaagatgaggaggaagatAGTAGTGATGAAGAAAATGGTGCAGGCGAAGGTAAGAATGCTGTTAGTGGAGCAGAAGAGCAGAATTCTTTAAATCAGTGCCTGGGTAGGTGTAGGATAGACTGCTTTGCCCATTCACTGAGTCAGTGCATACGGGAAGGGATCTGTTCCTCCTCTCAGATATCCACAACACTCACTAAAGCAGCTTGCTTCTACAACTATGTTGTTGCTACAGTTACTTCTGAAAAACTTAGTAAAGTCTTTGGTCCTGGCACAGTAGGAAATGGACAGCACCCATCAGCCTTGGACAGGGACTGGAACACCCAGCTAAAGAAAATGCGACAAATGCTTGAATCATTGGATTTTTTGGAGGACATTGTGGACAGAAATGACTTGGCTCTCAACAGTGTTGAAAAAGCCACTCTGCAAGAACTGGTTGAGATCTTGGAACCTTTTGAGGAAGCCACAGATATGGTCCAGGGAGACAAGCATGTTTCTATCAGCCTTGCCCTCCCCAGCGTTCTGGGCCTACGTAAGCATCTGGCAGAAGTTATGACACACCAGTGTGCAGGACTGGTTACAGGATTGACTCATGCACTGGACCAGAAATTAGCTGCCATCCTAGAGGATCCTCTATATGTCACAGCCACTACCCTGGACCCGCAGTTCAAGCTTTCTTGGAGCAGTGACCGGGACTGGCACAAGCAGGTTCTCCTGGAGGAGATGGGAAAGCACACCCAGCCTGTGAGTCCACCAGAGCCCAGTTCAGATGCTCAGCCATCCCCATCTAAACGCAGCAGACTATTCTCTTTCATCAAAGAAAGGCCCTCCACACAGGCCAAGAGTATGGAGCAGGAGCTGGCTGCATACCTGCATGAGGAGCCCACAGAAGAAGATCCCCTGCAGTACTGGAAGCGCAAGTCTATTGATTTTCCTCTACTTTCAGTAGTGGCCAAGAAAGTGTTTACAGTGCCAGCTACAACAACAGCTGTGGAAAGGATATTCTGCCTTGTAGGCAAAACCCTAAGACCCGAACACTGccgactccttccaaaaaactTAGATACACTGATTTATTTGAAGGCCAACTACAGCATATTGTGGTCTTAACTGCTTTAAAATGGCATATTTACAGGAAACTGACAGTAGATTTAGAgtacttggattttttttaattaaaggatgCCTCAAACCCGAAATCAATGAGCATAAAACTGCAGCATCACCCAAAGTAATATTAAACTGTTTTAGTCTGTA
>XM_034311770.1
agagaacccagaggaaacccacgctGACGCTGggagaactccacacagacagtgaccAGAGCTCAGGTCAGGATCGGACCGGCGACCTGGTGCTTTGAGGCAGCACTTAAATATGATTTCTTCTTGTTTCTGGCTGAAGGGATATTTGGATTTTTGGGAGGGTGGAAGAGTTTGTGACAAACAACAATATTAGTAAACCTGACTTTGCAAACTGGAATCAGGTTCACAGGCTTCGGGTGGAAGGTTTCCAAGTCCAgTTGAAATCGGCAATGAACAGCCTGGCTAAATTAACCTTGAGATGCTCTCTATTTTCCGTAAACATCAAGCAATGTACAATGagtttttaaggaaaaaagatGTCAAAAGAGAGGCCTATTCTTCTGGGGCAGTGCAGTCCTACACACCCGTAAGTGGGGCCAGTCGAACAGCTTCTCAGAGTGGGGCGGGAACAACCAAATTTGACCGGAGCGATCCACGACAGTCCCTCATTTCTGAAACAATTGCCAAGATGATCGTCCGCGACCTGCAACCTGTGCAGATTGTAGAGAATGAGGGCTTCCGTGAGCTACTTAAGCTCCTTGAGCCTCGTTACGTCCCAGAGCCGAGCCATTACATACAACAGCAGCTTCTCCCGGCTTACAGCTACCAAGTACAGCTAGCGACCAAGCTGGCTCTCTCAGGAGTCGAGACCTGCAGTATCACCCTGGACCTGTGTACGAGCAATGCTGTGTCTGTCAACAACAGTTCTGGCTACTTGGGCGTGACATGCCATTTCATAACCCCAGACTGGCACATCAAATCCACGCTATTATCATGTATTCCTCTCCAAAATTATAGGGACACACAGCGCATGCTCACTGAGTTCGACGAGATCTGTCATGTTCATGATATCTCGGGTAAGGTGTTTCGCATCGTTGCTGATCCCTCCCCTTGTGAAAACCGATCTACCTTCCGCCTGCCTGGTTTTTATCTCCATGGTAATGGTATTGTggaagatgaggaggaagatAGTAGTGATGAAGAAAATGGTGCAGGCGAAGGTAAGAATGCTGTTAGTGGAGCAGAAGAGCAGAATTCTTTAAATCAGTGCCTGGGTAGGTGTAGGATAGACTGCTTTGCCCATTCACTGAGTCAGTGCATACGGGAAGGGATCTGTTCCTCCTCTCAGATATCCACAACACTCACTAAAGCAGCTTGCTTCTACAACTATGTTGTTGCTACAGTTACTTCTGAAAAACTTAGTAAAGTCTTTGGTCCTGGCACAGTAGGAAATGGACAGCACCCATCAGCCTTGGACAGGGACTGGAACACCCAGCTAAAGAAAATGCGACAAATGCTTGAATCATTGGATTTTTTGGAGGACATTGTGGACAGAAATGACTTGGCTCTCAACAGTGTTGAAAAAGCCACTCTGCAAGAACTGGTTGAGATCTTGGAACCTTTTGAGGAAGCCACAGATATGGTCCAGGGAGACAAGCATGTTTCTATCAGCCTTGCCCTCCCCAGCGTTCTGGGCCTACGTAAGCATCTGGCAGAAGTTATGACACACCAGTGTGCAGGACTGGTTACAGGATTGACTCATGCACTGGACCAGAAATTAGCTGCCATCCTAGAGGATCCTCTATATGTCACAGCCACTACCCTGGACCCGCAGTTCAAGCTTTCTTGGAGCAGTGACCGGGACTGGCACAAGCAGGTTCTCCTGGAGGAGATGGGAAAGCACACCCAGCCTGTGAGTCCACCAGAGCCCAGTTCAGATGCTCAGCCATCCCCATCTAAACGCAGCAGACTATTCTCTTTCATCAAAGAAAGGCCCTCCACACAGGCCAAGAGTATGGAGCAGGAGCTGGCTGCATACCTGCATGAGGAGCCCACAGAAGAAGATCCCCTGCAGTACTGGAAGCGCAAGTCTATTGATTTTCCTCTACTTTCAGTAGTGGCCAAGAAAGTGTTTACAGTGCCAGCTACAACAACAGCTGTGGAAAGGATATTCTGCCTTGTAGGCAAAACCCTAAGACCCGAACACTGccgactccttccaaaaaactTAGATACACTGATTTATTTGAAGGCCAACTACAGCATATTGTGGTCTTAACTGCTTTAAAATGGCATATTTACAGGAAACTGACAGTAGATTTAGAgtacttggattttttttaattaaaggatgCCTCAAACCCGAAATCAATGAGCATAAAACTGCAGCATCACCCAAAGTAATATTAAACTGTTTTAGTCTGTA
>XM_034311771.1
gagaacccagaggaaacccacgctGACGCTGggagaactccacacagacagtgaccAGAGCTCAGGTCAGGATCGGACCGGCGACCTGGTGCTTTGAGGCAGCACTTAAATATGATTTCTTCTTGTTTCTGGCTGAAGGGATATTTGGATTTTTGGGAGGGTGGAAGAGTTTGTGACAAACAACAATATTAGTAAACCTGACTTTGCAAACTGGAATCAGGTTCACAGGCTTCGGGTGGAAGGTTTCCAAGTCCAgCGTAAACATCAAGCAATGTACAATGagtttttaaggaaaaaagatGTCAAAAGAGAGGCCTATTCTTCTGGGGCAGTGCAGTCCTACACACCCGTAAGTGGGGCCAGTCGAACAGCTTCTCAGAGTGGGGCGGGAACAACCAAATTTGACCGGAGCGATCCACGACAGTCCCTCATTTCTGAAACAATTGCCAAGATGATCGTCCGCGACCTGCAACCTGTGCAGATTGTAGAGAATGAGGGCTTCCGTGAGCTACTTAAGCTCCTTGAGCCTCGTTACGTCCCAGAGCCGAGCCATTACATACAACAGCAGCTTCTCCCGGCTTACAGCTACCAAGTACAGCTAGCGACCAAGCTGGCTCTCTCAGGAGTCGAGACCTGCAGTATCACCCTGGACCTGTGTACGAGCAATGCTGTGTCTGTCAACAACAGTTCTGGCTACTTGGGCGTGACATGCCATTTCATAACCCCAGACTGGCACATCAAATCCACGCTATTATCATGTATTCCTCTCCAAAATTATAGGGACACACAGCGCATGCTCACTGAGTTCGACGAGATCTGTCATGTTCATGATATCTCGGGTAAGGTGTTTCGCATCGTTGCTGATCCCTCCCCTTGTGAAAACCGATCTACCTTCCGCCTGCCTGGTTTTTATCTCCATGGTAATGGTATTGTggaagatgaggaggaagatAGTAGTGATGAAGAAAATGGTGCAGGCGAAGGTAAGAATGCTGTTAGTGGAGCAGAAGAGCAGAATTCTTTAAATCAGTGCCTGGGTAGGTGTAGGATAGACTGCTTTGCCCATTCACTGAGTCAGTGCATACGGGAAGGGATCTGTTCCTCCTCTCAGATATCCACAACACTCACTAAAGCAGCTTGCTTCTACAACTATGTTGTTGCTACAGTTACTTCTGAAAAACTTAGTAAAGTCTTTGGTCCTGGCACAGTAGGAAATGGACAGCACCCATCAGCCTTGGACAGGGACTGGAACACCCAGCTAAAGAAAATGCGACAAATGCTTGAATCATTGGATTTTTTGGAGGACATTGTGGACAGAAATGACTTGGCTCTCAACAGTGTTGAAAAAGCCACTCTGCAAGAACTGGTTGAGATCTTGGAACCTTTTGAGGAAGCCACAGATATGGTCCAGGGAGACAAGCATGTTTCTATCAGCCTTGCCCTCCCCAGCGTTCTGGGCCTACGTAAGCATCTGGCAGAAGTTATGACACACCAGTGTGCAGGACTGGTTACAGGATTGACTCATGCACTGGACCAGAAATTAGCTGCCATCCTAGAGGATCCTCTATATGTCACAGCCACTACCCTGGACCCGCAGTTCAAGCTTTCTTGGAGCAGTGACCGGGACTGGCACAAGCAGGTTCTCCTGGAGGAGATGGGAAAGCACACCCAGCCTGTGAGTCCACCAGAGCCCAGTTCAGATGCTCAGCCATCCCCATCTAAACGCAGCAGACTATTCTCTTTCATCAAAGAAAGGCCCTCCACACAGGCCAAGAGTATGGAGCAGGAGCTGGCTGCATACCTGCATGAGGAGCCCACAGAAGAAGATCCCCTGCAGTACTGGAAGCGCAAGTCTATTGATTTTCCTCTACTTTCAGTAGTGGCCAAGAAAGTGTTTACAGTGCCAGCTACAACAACAGCTGTGGAAAGGATATTCTGCCTTGTAGGCAAAACCCTAAGACCCGAACACTGccgactccttccaaaaaactTAGATACACTGATTTATTTGAAGGCCAACTACAGCATATTGTGGTCTTAACTGCTTTAAAATGGCATATTTACAGGAAACTGACAGTAGATTTAGAgtacttggattttttttaattaaaggatgCCTCAAACCCGAAATCAATGAGCATAAAACTGCAGCATCACCCAAAGTAATATTAAACTGTTTTAGTCTGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106573009, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920565.2 True 2488 mRNA 0.47 2 11247652 11254606
XM_034311770.1 False 2245 mRNA 0.47 3 11247652 11253543
XM_034311771.1 False 2188 mRNA 0.47 2 11247652 11253542

Neighbor

gene id symbol gene type direction distance location
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding downstream 5348 11238252 ~ 11242304 (-)
LOC113530590 LOC108275622 coding downstream 131979 11114279 ~ 11115673 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding downstream 197917 11043263 ~ 11049735 (-)
slmapb LOC108276397,LOC108436320 coding downstream 208197 11030067 ~ 11039455 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding downstream 227937 11016816 ~ 11019715 (-)
ccdc115 ccdc115 coding upstream 1458 11256064 ~ 11258687 (-)
trnae-uuc_4 NA coding upstream 4437 11259043 ~ 11259114 (-)
trnan-guu_24 NA coding upstream 18724 11273330 ~ 11273403 (-)
fkbpl fkbpl coding upstream 19484 11274090 ~ 11277676 (-)
LOC113530844 LOC108275904,LOC108436332 coding upstream 117636 11372242 ~ 11376560 (-)
LOC113530615 fam208a non-coding downstream 156317 11089065 ~ 11091335 (-)
LOC113530895 NA non-coding downstream 208684 11037822 ~ 11038968 (-)
G252969 NA non-coding downstream 241035 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 250216 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 335187 10904886 ~ 10912465 (-)
G253174 NA non-coding upstream 10303 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 98896 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 104909 11359515 ~ 11361585 (-)
G253384 NA non-coding upstream 108366 11362972 ~ 11364414 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding upstream 276098 11530704 ~ 11533297 (-)
abhd6b LOC108275644,LOC108436291 other downstream 222643 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 231986 11009463 ~ 11015666 (-)
sinup NA other downstream 608934 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 777856 10460694 ~ 10469796 (-)
G252373 NA other downstream 1217659 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 201414 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 294788 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 584190 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 901122 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1642868 12897474 ~ 12934308 (-)

Expression


Co-expression Network