ccm2l (ccm2l,LOC107666505)


Basic Information

Item Value
gene id ccm2l
gene name ccm2l,LOC107666505
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13574516 ~ 13587741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920625.2
acacacacacacacacacacacacactcagatactATTATACTCATTTACACACTGCCAGCTGACATGGAATATGAGCCCAAGAAAATCAAGAAGGGGTTTGTTTTACCAATTAAGCGCCTGGTCTTCCCAAAGTTGGCCCGGAGGCAGGCAGACAGGGGCAGTGCATATCGCAGGCCTCTGCACACCGTGCCTCTTTACCCACCAGACTTTCTCATCCATCCTGAACGCCTCATCTATGACTACGTAGAGAAGGAAGTGAAGTTTCTGGGTCATCTGACATGGGTGTCTTGCTCCCTAAACCCCTCCAGCAGAGACGAACTACTGCAACTTCTGGACACTGCCAGGAAGCTGAAGGTCCTGCCTCTTCAGACAACCGTAGAGCAGGACTGCATCCTCAGTTTATCTGCACGCTGTCTGCTGCTTACTTGGAGAGACAATGAGAAACTACTGCTGCGAATCCCCACGCATGAGATAGCTGCCGCCTCCTACCTGCGGGACGATGCCCTGCACCTGCTGGTGCTCAAAACAGGTTTGAATGTGGATACCATTATAGCGGGGGACAGCCTTGAAAAAAGGCCTACTGGTCTAGAAGGCCGCAGACAGACCATGAGCAACGCTGACCCTCGGCCTGCGGGGGGCACCATGGAGCGGCGCCATACAATCTGTGGTGTGGACTGGAAGCCGCTGTCTCGCCATGAGTCAAAGCAGAGTGGTACTGGTGTGAGTGGAGTAGGGCCcacaggtggaggaggaggcaACAGTGGAGGTGGCAGTCTGGAACGGAGGCAGGTTGGGGGCAGTTGGGAGCGACGCCAAACCCGCAAGCCCTGCGGAGGAAGCTGGGAGAAGAGACCCATGAGTGGGAGCTGGGAGAGACGGCTTGTAGGAGGCAGCTGGGAGCACCGTGGTCCTGTGGGCAAAGGTGGAGGGGGTGTGGGAGGCAGTTGGGAGAAGAGACACGGACCTGGGGGGAAAGCAGGAGGGAGCTGGGAGAGGAAGCATGGGCAGGGGGGCAGCTGGGAGCGCAGACAAGCCTTTATGGGAAGCTGGGAGAGAGGCAAGGCATATGGAAGCTGGGAGAGAAGGAGCCACAATCCACTGGAGCCCACACCGTGCCCTGATGCTTACTGCAACCTGGTTGTACTGGCTGTGGAGAACAGGgatgCTGCAGAGGAGTACTGTGCTCTCATCTGTCAGATGTTTCAAATCATCTATGGACACCAGACCATTGAGTGTGTGGACAGGGCAGGGTATCACTACACCATGCCTGACCGTTATTGGCTACAGAGAAGTGACAGCTGTCTGACAGATATGACGTATAGCTATGACACAGACTTCAGCTGCTGCAGCTCATATGATGGCTCTCAGTATGCCTTTGAACCATACTACAGTGAGAACTACAGTGAGAATTCATCTCTTTCCTATCAGGACTCGCATCGCAGCCTGGCGTCCATACACAGCGACTCGGAACCCAGTAATGCAAGCCTGCATCTAATGCAAGAGTACATGATTACGCTACGCAATAAGCTGTCTCCCCAGGAGATTCAGCAGTTTGCTGTGTTGCTGAGGGAGTACCGTGTGGGCGCTCCCATAGACCAGTTCTGCTCGGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTCCTGCTCGGTATGCGCCCCTtcatccctgaccaggatgtGGGAACTTTTGAGACATTCCTGGAAAGCATTGGCATTCGAGAGGGCGGGATTCTGACGGATAGTTTCGGGCGGATCAAGCGGAGTATGAGCAGCATGTCGGCCACGGCTGTGAGAGGCTACGAGGGATCGTATGACTTCAACAGTAGAATGAGTGATATCGCACACGACATTGAGGCCCTCGGATTtgaggagggagatggagacATTGAGGAAGAGGACTTCTACCTCTGATTACTACCTGAACTGTATATAAGTTTAAATTTTAAGTCAGTACTAAGGATGAGtctataaaaaattatttccaaCATGAGATTGTATGTACTTTTAAAGATTTATGTTATAAATCTATAAACAAAGTAAGTTCTAGACTTTTAGGGGCTTCCCCAGCAGAATGACTCATTCTGCCTCCACACCCTCTTCAGCACTCTCCTTTCTTTATCCTTTTAGGGACTTGATTAATCTAAAGTGTTCtaactaatctttactgatagGACTTGATTAATAGAAAGTGTTCTAACTTTCACATGAACTGGACATAACTCCCTTTTGCACATCAAATATGTATACTTTGAATTATCTGATTACCTACAGGCAATAGGATGATTTGAGGTTTTATCAAATAATTTCTAaccaattattaaaaatatttcattatacaaTAATACTTATTAGAACTATAGTTTTAAACGGTATTGACCTACAGTCATAGGCCAAAATTTATCAGAGGTTCCTCTTTGGTTACCAGGTCTTAAGCAACTACTTATGTGACTTAATAGGAAGTTACATGCCGGAAATCACATACCagctctgttacacacacacacacacacacacacctgcatggaGGATAGCATATGAGTAGTTTTTGTGTAAACGTTTATATTTAGAATAACTGACATGAAGATATGATAGACTGACTGTTtagagtatttattttacattgatAAAGACATGTACTGAAAAATGAGAAGAAGCTACATGTACACAAGCTCTGAGAGCCTGGCTGAATCTGATATTGTcccattaaaaacatatttcatgtattaaaacttgttaaaacata
>XM_026920626.2
cacacacactcagatactATTATACTCATTTACACACTGCCAGCTGACATGGAATATGAGCCCAAGAAAATCAAGAAGCGCCTGGTCTTCCCAAAGTTGGCCCGGAGGCAGGCAGACAGGGGCAGTGCATATCGCAGGCCTCTGCACACCGTGCCTCTTTACCCACCAGACTTTCTCATCCATCCTGAACGCCTCATCTATGACTACGTAGAGAAGGAAGTGAAGTTTCTGGGTCATCTGACATGGGTGTCTTGCTCCCTAAACCCCTCCAGCAGAGACGAACTACTGCAACTTCTGGACACTGCCAGGAAGCTGAAGGTCCTGCCTCTTCAGACAACCGTAGAGCAGGACTGCATCCTCAGTTTATCTGCACGCTGTCTGCTGCTTACTTGGAGAGACAATGAGAAACTACTGCTGCGAATCCCCACGCATGAGATAGCTGCCGCCTCCTACCTGCGGGACGATGCCCTGCACCTGCTGGTGCTCAAAACAGGTTTGAATGTGGATACCATTATAGCGGGGGACAGCCTTGAAAAAAGGCCTACTGGTCTAGAAGGCCGCAGACAGACCATGAGCAACGCTGACCCTCGGCCTGCGGGGGGCACCATGGAGCGGCGCCATACAATCTGTGGTGTGGACTGGAAGCCGCTGTCTCGCCATGAGTCAAAGCAGAGTGGTACTGGTGTGAGTGGAGTAGGGCCcacaggtggaggaggaggcaACAGTGGAGGTGGCAGTCTGGAACGGAGGCAGGTTGGGGGCAGTTGGGAGCGACGCCAAACCCGCAAGCCCTGCGGAGGAAGCTGGGAGAAGAGACCCATGAGTGGGAGCTGGGAGAGACGGCTTGTAGGAGGCAGCTGGGAGCACCGTGGTCCTGTGGGCAAAGGTGGAGGGGGTGTGGGAGGCAGTTGGGAGAAGAGACACGGACCTGGGGGGAAAGCAGGAGGGAGCTGGGAGAGGAAGCATGGGCAGGGGGGCAGCTGGGAGCGCAGACAAGCCTTTATGGGAAGCTGGGAGAGAGGCAAGGCATATGGAAGCTGGGAGAGAAGGAGCCACAATCCACTGGAGCCCACACCGTGCCCTGATGCTTACTGCAACCTGGTTGTACTGGCTGTGGAGAACAGGgatgCTGCAGAGGAGTACTGTGCTCTCATCTGTCAGATGTTTCAAATCATCTATGGACACCAGACCATTGAGTGTGTGGACAGGGCAGGGTATCACTACACCATGCCTGACCGTTATTGGCTACAGAGAAGTGACAGCTGTCTGACAGATATGACGTATAGCTATGACACAGACTTCAGCTGCTGCAGCTCATATGATGGCTCTCAGTATGCCTTTGAACCATACTACAGTGAGAACTACAGTGAGAATTCATCTCTTTCCTATCAGGACTCGCATCGCAGCCTGGCGTCCATACACAGCGACTCGGAACCCAGTAATGCAAGCCTGCATCTAATGCAAGAGTACATGATTACGCTACGCAATAAGCTGTCTCCCCAGGAGATTCAGCAGTTTGCTGTGTTGCTGAGGGAGTACCGTGTGGGCGCTCCCATAGACCAGTTCTGCTCGGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTCCTGCTCGGTATGCGCCCCTtcatccctgaccaggatgtGGGAACTTTTGAGACATTCCTGGAAAGCATTGGCATTCGAGAGGGCGGGATTCTGACGGATAGTTTCGGGCGGATCAAGCGGAGTATGAGCAGCATGTCGGCCACGGCTGTGAGAGGCTACGAGGGATCGTATGACTTCAACAGTAGAATGAGTGATATCGCACACGACATTGAGGCCCTCGGATTtgaggagggagatggagacATTGAGGAAGAGGACTTCTACCTCTGATTACTACCTGAACTGTATATAAGTTTAAATTTTAAGTCAGTACTAAGGATGAGtctataaaaaattatttccaaCATGAGATTGTATGTACTTTTAAAGATTTATGTTATAAATCTATAAACAAAGTAAGTTCTAGACTTTTAGGGGCTTCCCCAGCAGAATGACTCATTCTGCCTCCACACCCTCTTCAGCACTCTCCTTTCTTTATCCTTTTAGGGACTTGATTAATCTAAAGTGTTCtaactaatctttactgatagGACTTGATTAATAGAAAGTGTTCTAACTTTCACATGAACTGGACATAACTCCCTTTTGCACATCAAATATGTATACTTTGAATTATCTGATTACCTACAGGCAATAGGATGATTTGAGGTTTTATCAAATAATTTCTAaccaattattaaaaatatttcattatacaaTAATACTTATTAGAACTATAGTTTTAAACGGTATTGACCTACAGTCATAGGCCAAAATTTATCAGAGGTTCCTCTTTGGTTACCAGGTCTTAAGCAACTACTTATGTGACTTAATAGGAAGTTACATGCCGGAAATCACATACCagctctgttacacacacacacacacacacacacctgcatggaGGATAGCATATGAGTAGTTTTTGTGTAAACGTTTATATTTAGAATAACTGACATGAAGATATGATAGACTGACTGTTtagagtatttattttacattgatAAAGACATGTACTGAAAAATGAGAAGAAGCTACATGTACACAAGCTCTGAGAGCCTGGCTGAATCTGATATTGTcccattaaaaacatatttcatgtattaaaacttgttaaaacata

Function

symbol description
ccm2l Acts upstream of or within anterior/posterior axis specification; heart contraction; and heart morphogenesis. Is expressed in heart and notochord. Orthologous to human CCM2L (CCM2 like scaffold protein).

NR:

description
cerebral cavernous malformations 2 protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920625.2 True 2751 mRNA 0.48 10 13574516 13587741
XM_026920626.2 False 2713 mRNA 0.48 10 13574533 13587741

Neighbor

gene id symbol gene type direction distance location
xkr7 xkr7,LOC108435212 coding upstream 3215 13509588 ~ 13571301 (+)
sox18 sox18,sox17,LOC103367850,LOC103467917,LOC103385144,LOC108436137,LOC104941087,LOC107736623 coding upstream 86005 13466509 ~ 13488511 (+)
rgs19 rgs19,LOC108275976,LOC107727031,LOC107666537 coding upstream 143635 13386896 ~ 13430881 (+)
LOC117599301 NA coding upstream 189572 13373774 ~ 13384944 (+)
npbwr2b npbwr2,LOC108410549,LOC107727007,LOC107558229,LOC571123,LOC107559472,LOC107705671,LOC107666655 coding upstream 384834 13168514 ~ 13189682 (+)
cables2b cables2,LOC107726996,LOC103130974,LOC107666605,LOC103370114 coding downstream 2724 13590465 ~ 13621861 (+)
snx21 snx21 coding downstream 473967 14061708 ~ 14067419 (+)
phactr3a LOC108276101,LOC108438212,LOC107696979,LOC107705714 coding downstream 499334 14087075 ~ 14120704 (+)
fam217b LOC108276482 coding downstream 569433 14157174 ~ 14161605 (+)
si:dkey-178k16.1 LOC108276489,LOC108438207 coding downstream 617105 14204846 ~ 14264181 (+)
G254287 NA non-coding upstream 66733 13507551 ~ 13507783 (+)
G254123 NA non-coding upstream 581304 12993002 ~ 12993212 (+)
G254006 NA non-coding upstream 640215 12933229 ~ 12934301 (+)
G254007 plagl2 non-coding upstream 670150 12903970 ~ 12904366 (+)
G254005 NA non-coding upstream 672139 12899453 ~ 12902377 (+)
G254403 NA non-coding downstream 25597 13613338 ~ 13613537 (+)
G254404 NA non-coding downstream 26206 13613947 ~ 13614240 (+)
LOC117599220 NA non-coding downstream 133543 13721284 ~ 13722885 (+)
LOC113530938 NA non-coding downstream 135624 13723365 ~ 13727382 (+)
G254472 sulf2 non-coding downstream 239943 13827684 ~ 13832691 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 604507 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 720136 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 1188520 12366613 ~ 12385996 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other upstream 1430989 12141472 ~ 12143527 (+)
trim101 LOC108276180 other upstream 1453144 12113622 ~ 12121372 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other downstream 482487 14070228 ~ 14072216 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other downstream 1034576 14622317 ~ 14673952 (+)
rps21 rps21,LOC107666483 other downstream 1529329 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 2622349 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 2644272 16232013 ~ 16326614 (+)

Expression


Co-expression Network