LOC113530551


Basic Information

Item Value
gene id LOC113530551
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23584779 ~ 23604485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920687.2
ATGTCTTCACTTTTCTGCAAACTAACTACCCTGCATGTTATATCTGCTGTTATTCTGATCTTTCTGAGTTTACCTTTAGTGGACACCACATATTGGGACTCGGTCTATCACTACCAGCAAAGGCCAGTGCCTGACCCTGGATCTATTATCAAAGCTAATAATGAGGTTGTAGTACTGAGTGGGCACTCAGTGTCTTTGGACCCTTTCAACCACCTTCTTATTAAGGTTCAGCCTGGAGATCGGTGCTATTTAACAGTTCTGGGCCAAGAACCACTGGCACAGAAATTTGGGATGGTCTCACCTAAAAAATTCCCTTGTTCTTTCAAAAAAGGAGATGTTGAATATGTGCATTTTGGCTCTCAGAGTGGTGGAATGGATTGCGTGAAACTCCAGCTGAGATATGACACGAAAACAGATACCATCGTCCTTCCTCTCACCTTACGAGTTGCAGTGGCCCCGAATGCACAACGGCTTGTGACATTAAACCAACCCTTAGTAGTAGATAAACAGAATGGCTACAGTAATCCCATCAATTCCCAAGGACTTGCGATTACATTCAGTGACTCAAGATGTGTCCTGACACCCCTTATTGGTAAGGGTGGTTATCCCAGGTATGGATCACTTATGAATTACTTTCCTAACTCACAACCAGTAGACTGTAATGTATTTCTTAACCTTGGTGTGCGCTACAAACTTAAGCCTGTTACAGGATCACCCAAAGTAGATTTTGTACCTTTTGTGGTAGAGAGATGGGATAATCAGGACAGGAAGCTACAGCAGGAGCACTTCCAGTTCAAAGTCATCATAGATGGTACAGCAGTAAATAGCCCTCCTAAACCAAGTTTCATCTCACTGATGATGATGGAAGTAAGTCAGTTTGTGATGACAGCAATTACTGCTGATATGCTAGCAGCTGAGGATCTAGAATCTGATCTGGATGACCTGGTATTCAAAGTGATCTCTCCTCCAGAGCAAGGTATTATCATTAGCACTGATAATCCAAATCAACCCATTAGTGCTTTTTACCAGAGAGACCTTCGGGATCTGAAAATTGCTTTCAAGCCTCCAGGAGAGGACTCTGATTCTGAGAGGATTCTACACACTGAGTTTGAGGTTGTTGATCAAGAAGGTTCTACGTCAGATCCCTTCTCTTTTATGATTGTGGTAAAGCCCATGAATACACTGGCTCCAGTTGTTACCTTGAATGCTGGTCAGTTTCTTTTTGAGGGCCAGTCCAGACCACTCTCCAGCAAACTAAACCGCATCAGTGATGAAGACAACCTTGCAGATGTCAGGATATCTGTCGTCCATGGGTTGCGTCATGGAACTCTAACAGTTCTTGGATCGCAGAGGAAATTTTTCACACCAGATGACTTGGAGACTAGTGTGGTCATGTATGAGCATGATGGCACTGAGACTTTCAGTGACAACATTGTTTTCCGGATGACGGATGGGAAAAATGAGGTAGAGTTCTTGTTTCCGGTTACTATAATCCCACAAGATGATGAGCCACCTGTTGTTAATGTGAACACAGGGTTGGTTATGGTGAAGGGAGAGACTAAACAGATTTTGCCAGCTGTATTAAGTGCAACAGATGTAGACTCTGAAAACAGGCAACTGAAATTCATTCTAGTTTATCCGTATTCCTCAGTGGGGCAAGTGCTTCTCAGACAACCTCAGACCCCTGAAGACATTTCTTTATGGAGATATAGTGACTCTAACCATGTGTTTGAACGAGTGACTGTGGAGTGGTATTTCAGCGACATCTTAGAAGGAAAGCTATACTATCGCTATATTGGCCCCCCATTAACATCCACAATTACAGACCACTTTAGCTTCCGAGTTGAAGATGACAACAACCCTCCAAACCAATCAGGAGAGCACATCTTCTACATCAAGATTCATCCAATTGATGATCTGGCTCCAGAACAGTTTCCTGGAACCACGTTATGGGTCCCAGTTCGGGAATACGAACTGACTATCCTTAACAGGGACATGCTGCACTTCACTGATCTCACTTCTGCTGACAAGGACCTCTGGTATACAATTGACTTCCCATCTTTTAACCAGGAAGCGACCCAAGAACAAAGCTTCCTGGGTCACTTTGTTTTGACTGACAATCCAAATACCATAATTGTGGAATTTACCCAGGCACAGATTAATTATGGCAAAGTGGCTTACAAGCCTCCCGATCAGGAAATTGGTGTTACAACAAGAGAAATCCAATTCGCATTTACAGTTAAGGACGCTGCTGGAAACTTGGCCAGTGGTCGATTAACCATTGTGCTCCAGCCAGTGAACAATAAACCTCCACAAATTACCAACACTGGGTTGAATGTGGTGAGTAAGAGCACCTACGTCATTGGCAAAGACGTCTTGGATGTAACAGATCAGGACACGGTTTCAGAGAACATTACCTTCACAGTGATACAGACCCCAAACAAAGGGGTGCTCAGATGCCGGGAAAAAGATCTCACAACCAAGAAAATCTTCCAGCTAAGTGACATAGAGGCAGGTTTGCTTGTTTATGTCCACGGTGGAAGTGGAGACTCACTACATGATCAATTTAAATTAGATGTTAGTGATGGTATTCATCATGTACCTATAACTGTGAGAGTCAATATAAGGCCCATTGAGCCAGTTATCCCAGTGGTCACCATACATCCAGGAACATTAGACATAACCGTTGATGTAACTGAGAATGGAATAGTTAAGATTACATCTGAGGATTACAGGCCAAACGCTGAAGGCATCAGTATAACCCTTAAAGTGGAATCCACTCCCAGATTTGGTGTAATCCAGGTAAATAAAGTCCTGTCTAATATATTTACACTTCGCAGCTTGATAAATGGTGCTGTGACCTACATTCATACAGCTGGCGAGGTAGGACCAGCCAGGACTAATGATTCTTTTAGTCTTACTGTCTCTGGCAAATGGATTGTGAATGgcaaaatgattcaaaatgtCATGGTTCATGTGTCTATTCATCCTGTGGATAACAGTCCACCTGTCGTCCGCATAGGGGAGCAGTTTACTGTAGAGGAAGGaggtaaaaatattattaaagagGACAACATACAAGCTAGGGACCTGGATACAGAAATAGAATTTATTCTGTGCACTATAATGACACAGCCATCTTTtggatttgttgaaaatgtttctCCTGCACCAGGTTATGAAAAGTCAAGATCGGGGATTGCAGTTAGTGCATTCACTGTGAAAGATATTCAACTTGGACATATTCACTATGTCCAAAGTGTTCATAAAGGTACAGAGCCAGTGGAGGATAGGTTTACCTTTCAGTGCACCGATGGAACCAACTTTTCTGATAGACACATTTTCCCTGTCATCATCACCCCAGCAAACGATGAGGAACCTGTCGTGTTCTGTCGGGAATTTGTGGTAATGGAAGGCATGAGCTTGACAATTGACATTCCTATTCTTAATGCAATAGACATTGATATTCCCAAAGACATCCTGGAATTTGAGATTGTTACCAGTCCAAAGCATGGCAGAATTGTTCAGCATCTTACAAATAGGACAGAGCTGATTGTTAAGTTCAGACTGGAGCAAATCCAAGCTGCTTCTTCAATCATGTATGAACATGATGGCTCGGAGACGATGAACGACACTTTTAGAGTAAGACTGACTGACGGGAAACATGTGGTTGAAAAACAAATTGTTGTTTTGATTCTGCCTGTGGATGATGAAACACCAAGATTGTCTGTAAACAACGGACTGGAGGTTGAGATAGGAGAAACTAAAATAATCACGAACAGACTTCTTAAGGCTACTGACCTTGACTCATTGGACTCCAATCTTACTTTTATCCTTAGACAGGCACCATCTCAGGGATTTTTACAGCGTTTGGATCAATCTGTAAATTTGACCAATGGAATGAACTTCACTCAGGACGATATTGATAAAGCACTTATTCAGTATATTCACACGGGGCAAGGAGGTGTTCGAGACCTTCTAAAATTTGATGTGACTGATGGCACTAATCCTCTAGTGGACAGATACTTCTATATCACTGTGGGAGCTGTGGATAAAGTATTCCCAATAGTCATAAACAAAGGTGTGATGCTACCTGAAGGAGGTTCAGTGATCTTGACGACAGACATCCTCAGTACATCGGATCTAAACAGCCCCGATGAGCATCTCCGCTTCATCATTATACGCCCCCCATCTCGAGGACGTCTTGAGTGCACAGATCTTCCTGGTATTCCTGTCACTTCCTTTACCCAACTCCAGTTAGCTGGGAGTAAGATCCGATATGTACACACCTCACTAGAGGAAGCCCGTTTGGACAGCTTTGAATTCCAGGTCATGGATGGTCGGAATGTAGTGTTTCGGACGTTCCGTGTATCCATCACAGATGTGGATAATAAGCGACCAGTTTTGAGTGTGCACTCACTTGTTTTGGGTCAAGGCACAGCAAAATGTATTACACCTTTCGAACTTGGAGTAGAGGATCAAGACACACCTCATCACCTTCTCCGTTTCTCAATCACACGAGGCCCTGTACATGGGAAGATACTTTACAACAGTACACGCTCTGTTACCACATTCACCAAAGAGGACCTGAGGGAGAACCTCATTACATACAAGCATGACGGGTCGAACCATGGGGAGGACACCATCATGTTCACGGTCACAGATGGAACCCACACTGGGTTCTATGTGCTCCCAGAAATGGAGTATGAAACTAGCAAACCTCAGGTTCTCACAATCAGGATTAGTCTGGAGGAACGAGTGACTCTGAGAATAGTAGTGAACCGTCCAGCTTTGTCTCTTACTGTGCTGAAGACAGGACAGCTGGGCTTCAGGTTCTCCAGGAAAGTGCTCAGAACTGTGAAAAGCACACAAGGGACGGAAGTGAGGAGTGTGGATTTGATATACAGATTGACAGAACCTCCAAGATATGGCTTTATCAGACACTCTGATCTGAACAACACCAATACCTTCACTCAAGCTGATATCAATGATATGAAGATCTATTACATCCTTCTTGATGGAGTCAATGCCACCACggatgtttttacatttactgttgaAGACAAAGaGGGAAACCATCTGCGTCCAGAGTTATTCCGGCTCCACTGGTGCTGGGTGTCCTTCGAGAAGCGGATTTATCAAACAGAGGAGAAGAACAACTTGCTGGAGATCACGCTGAAGCGCAGAGGTTATCTCAGAGAAACCTCATTTGTTActatCAGTACAGTAGATGGCACTGCGGTACTTGGTCAGGATTTCCAGGTTAGCCCCCAGCGTCAGGTCCAGTTTAGTCCCGGTCAGACCCGGGCCACATGGAGGCTGCGAGTCCTTGATGACGAGTTATATGAGATATCTGAGAGTTTCCAGATTGTTCTCTCTGACCCTGTGCTGACATTACTGGAGCATCCAAACGTTGCAGCTGTAGAACTTGTTGACCTGGAAgatgagtccACAGTGTTTTTCTCCCAGAGTGAGCTAAAGGTAGAGGAGGATGTGGGAGAGCTACTGATCCCTGTTCATCGCCGAGGAGACATCAGTCAGGAGCTCATGGTCACATGTTACACACAGCAAGgcAGTGCGAGAGGAACCTCCCCTGGCTCTGTGCTCTCCTTCTCTGATTACATTTCCCGGCCCGATGAGCGCTCCAGCGTCCTCCTCTTCCACCGAGgacaaagagagagtgtgtgtcgcgtCCTCATCATTGATGACTCGCTGTATGAAGGCCAGGAGAGTTTTAATGTCACGCTGGCCACGCCCATGGGTGGGCGATTAGGGGCAGAGCACCCCAGCGTTCACGTCGTTATCCTGCCGCATCGTGATGATgagccGTCTGTGTTCTTCAGTAAGAGTGTGTATGCAGTGGAGGAGAGCGCAGGTGTGATGGAGGTTCAGGTCTGCAGGAGAGGATCTGATCTTTCTCACCCAACTACAGTCACTatcacctccacctccacacaGCCACCATCTGCCCAGGCTGGTGTGGATTACGTGGCAGTGGGCCTCAGTGTTCACTTCGCACCTGACGTCACTGTGATCACAGTGAAGGTTCTGATTCTGGATGATGTTGGCGAACCGGTGCTGGAAGGTCCAGAACATTTCCAGCTGGGTTTGAGCATGCCCATGAATGGCACGTTGGGACATCCAATCAGAGCCCTCGTTACCATTGACGATTCAGCAACTGATGttCCCTCTGTGCAGTTCGCATTCTCAGAGTACAGTGTGGACGAGGCAGATGGCAGCATTGTCGTCATAGTGATCAGATCAGGTGACCTGACgcaaaggtcagaggtcaggtgTTACACACGCCAAAGCTCCGCCCAGGCCATGATGGATTACAACGAGAGACCGGACACCGATTTGTCCATCATCACCTTTCAGCCAGGAGAGCGAGAGCAGAAGTGTGAAGTCACTTTAGTCGACGATTCTGAgtatgaagaagaggaggagcttCGTTTGGTTCTTGGAATCtccagcagccaatcagcagcGAGGATATCTCTGGGAAAACGGAGAGAGACACTGATCAGGATTTCAGATCGAGGAGACAAACCTGTCATCCAGTTCTCCGAGACACGGCTCTCTGTGCGAGAACCGAGGAACCGTGACGAGACGGAGACTGTGCGAGTGTCAGTGCAGCGTTTGGGAGATTGTTCCAGAACATCCATCGTGCGAGTGCACACACGGGACGGATCGGCCACCGCCGGAGAGGATTACACACCTGTATCAGTGGagctgCAGTTCACTGAAGGTCAGACGCTGCATGTTGTGGAGGTCTCTGTGCTTTATGACACTGAGAGGGAAACCAGAGAGACTTTCACTGTTCACCTCAAACCTGATGATAACATGGTGGCTGAtatacagAACACTAAAGTAATAGTGCACATAGACGAGGGGCCGTCTGTAGGGGGCGTCACTTTTCCTGCGGTTCCTGAAGTCGTGAGTCTCTTGGTCTATGAGAGAGAacacactggaacacacacacactccggtcacggcacacacactcctcctggATACCCGCtcgtgtgtgtgactgcatgcGACCCACAGCACTCTCGGTTCTCGGCACTCtcgtcactgtgtgtgtctgagggtGTGAATGACACTCTGACCGAATTCCGCTGGCTGGTGGGCGGGGCTGAGAGGGCTGCGGTGGGGCAGTTGGGCGAGGCGGTGGGGCAGTTGGGCGAGGCGGTGGGGCAGCTGAGTGAGCTCGAGGCGAGTGTGTTCATGGCTCCGGTGAGGGCCAAGCTGCTGGACGGAGTGTATTTCCGCGCAGGGTGGAAGGTGCAGTGTGTGGCGAGGGCCGTGAGTGTGTCGGGGCAGAGGGGGCTGGAGCTGAGCAGCACTGTAGTGCACATCAGCACAGAAGAggGTATGTGTCAGTCACACACTCCTGGTGTGGTAGGCGCCGAGCCATTTTCCGCTCACATCCGTTACACCGGCTCAGAGGACCGAGATCACCCTCACCTCGTGGCGCTAACCATCAGCTTGCCTCACACAGACGGTCTCTTGCCGCTGATCTCCACTCTGCCTCTCTCGTGGTCAGATGCTCTGAGTGCGGATGTGTCTCGTGCATTTAGCCATCGCTGCTCCAATCTGCTCGATCAGCACGAGGTCACCACTCGCTACGGGTTTGTCCCGaacaactccacacacacacactcacacactctgtggAGCCCGAGTACACGCCGATTCTACAGCAACCTGGACCTGGAGGCGTGTGTGTGGACGTTCCGGGCGTATTATGACCTGTCGGAGCTGCTGAGCGTTTGTGGTGGGACAGTtagcacagacagacaggtaaaTCTGGTGCAGTCGTTCGTATCTTTGCGGCTGCCACTATTCGTCTCGTACCTGTACCCTGCCTCGTCGGGCTGGATGACCTTCGACCTGCGCACTGAGCTGCGGCTGATGTTCGTCTACGACACGTCTATTCTGTGGCAGCAAGGCATCTCCAGCCCTCTTGATACCGAactacaggGTTCTCTGTATCCCACCAGCATGAGAATAAATGATGAAGGCCGCCTGCTGGTCACGTTCAGGACAGAGGCTCGTTTTCGGGGACAGTTTATACTGTTACACTCCGGTTCCTCGCTGCAGTCGGGGGTGAGGTGTGTGGATCAGCCTGcgctctccttctctctgtctctgattaGCACCGAATCCACCTTCGACCAGCCGACTCAGACCTGGAGCTTCACCTCTGAGTATgcggtGCGAGATTACTCAGGCTCCTACATTGTGACTTTGGTCCCCTGTGTAGCTCCGCCCACTGTGGGCTACACCAACCCACCTGTTTGTCAtccccaacaaccaatcacgtTCAGCCTGGATGTCCGTTTTCAGCagGTGAGCGATGCAGTGCCATCCGAGTTCACTCTGAACACATGCCTCTATCTGATGTCTAAGCGAGAGCTCTGGTTGTCTGATGGCTCCATGGGGTTTGGAGAAGAAGCAGATGTGGTGTTCTCTGAAGGTTCTCGGATATTCGGTCGTGTGATGGTGGACCCCCTGGCAAATCTCGGCTCTTCCGTCCTGTGTCAGATCGAGAAGGTGTTCCTGTGCGCCGGGGCGGATGGATACGTGCCAAAGTACCGACCGAGTAGCGGCGAGTTCGGCTGTCTGGCTGACGCAACTGCCCTCGTGTACAGACTCAAGATTTTGGACAAGTCTTCAGCACACACTCAGGATGAGATGTTTGGTGGTGTGTGGTTTGACGCTCAGTTGGCGGAGAACACTTCAGGAGCTGAGGCTCTTGTCCAGCAGGCTGGCTCAGACGGCTTCAGCTTCTCTTCTGCGCCGCTTTTTCAGGTCGCTGCGGGTCGCCAGTGGTACGTCCATGTAGTTTACACCGTCCACGCCGGAACAGGACGCAAACGTCACACCAGGAGCGAGAGAGACCACCACGCTATAATACCATCAAACCCAGGCTTTACGAAAGATGAGCCAATAGGACGGCAGAACAGCCGTGGCACTAACCTCCAGCCAATCAGCATCCAGAGTGCGGCGAGTGCGTTACACGTCCCTGCTGGAGCTGCGTCAGGTCTGGACGTGGACTCGCACACGATCGAGGAAACACACGGAAATCAGCCTAAAGTTTTGATGTTCCAGGCAGCCATGGTGCTTTTAGCCGTCACAGTCTTCCTGACTGGAgtcacactctgtgtgtgtgtgttcagaaaaaggaaaacacagaccacgaagaaacacacacactctctgagaccgaacacacactctgtgtcaGCACACACCCGGCCTGCTGGACCACACACTTATTCTGGTTATCCCAGggggaggcagagagagagagagcattctGGAAACTCTGAAGTCTGATGGCTGAACGCTggacaaggacacacacacacacacacacacacacacacacacactgtctgagGTCAAACACAAGCTCATTGATTTGTGACATTGATCTGTGATTGGGTGAAATAATGGAGATGACAGTAACAGAAATGAGCTGATCATTTGTGCTTCATCACAATGtgactacattttaaaaagaaagaaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920687.2 True 9542 mRNA 0.48 26 23584779 23604485

Neighbor

gene id symbol gene type direction distance location
LOC113530971 NA coding upstream 800 23572197 ~ 23583979 (+)
anapc10 anapc10,LOC107550153,LOC107564421 coding upstream 16106 23563545 ~ 23568673 (+)
otud4 otud4 coding upstream 38706 23530494 ~ 23546073 (+)
slc10a7 slc10a7,LOC107725722,LOC107752196,LOC107694411 coding upstream 62964 23510603 ~ 23521815 (+)
LOC113530383 NA coding upstream 75126 23507539 ~ 23509653 (+)
rnf150b rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535 coding downstream 619 23605104 ~ 23617167 (+)
si:ch211-149b19.2 LOC108275803 coding downstream 26108 23630593 ~ 23634770 (+)
si:ch211-149b19.3 LOC108275812,LOC108441537 coding downstream 31762 23636247 ~ 23642564 (+)
LOC113530587 col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408 coding downstream 67561 23672046 ~ 23763537 (+)
znhit6 znhit6 coding downstream 164750 23769235 ~ 23798029 (+)
G260074 NA non-coding upstream 22395 23527428 ~ 23562384 (+)
G260083 NA non-coding upstream 29702 23554596 ~ 23555077 (+)
G260011 NA non-coding upstream 110335 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 115722 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 222489 23344862 ~ 23362290 (+)
G260222 NA non-coding downstream 222407 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 257157 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 263166 23867651 ~ 23869556 (+)
G260232 NA non-coding downstream 313396 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 398064 24002549 ~ 24003381 (+)
G259993 NA other upstream 195465 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 201126 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 904237 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2042352 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2345780 21228320 ~ 21238999 (+)
G260415 NA other downstream 427742 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 664092 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 796099 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1020452 24624937 ~ 24636129 (+)

Expression


Co-expression Network