LOC113530567 (LOC108275599)


Basic Information

Item Value
gene id LOC113530567
gene name LOC108275599
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21052670 ~ 21056506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920704.2
CGAATTGGTCACTGGACACCAAGGGACCCCTCTGCTTTGTCATGTACTAGCAGGTGCTAACGATATGGCTCAGGTCTGGGGAGTAGTGATCTTTGTCCTAACTACGATGATCCGAGACTCACTGACCCAAAGGATCATTGGGGGCCAAGAAGTCGTGCCTCATTCCATCAAGTACCAAGCATCTCTACAGTATGAGAGAAATCACTATTGTGGAGGTATCCTGATCCACCAGCAATGGGTAGTGTCTGCTGCCCACTGCTGGAGACCGAGCAACATCATTCAAGTGGTTCTGAGCGCACATAATCTGGCAGTTGAGGACGGATCTGAGCAAGTGTTCAATGTGTCCAAGATCATATCCAACCCTACCTACAACCCGAAAACATATAATGGTGACATCATGTTCCTGAAGCTGAGCCACCCAGCTGTTCTAAACGCCTATGTCCAGCCGGCTCCTCTCCCGGATGACAGCACGCCTCCACTAGATGCTGGAACCACGTGCACAGTGAGCGGCTGGGGCGTCACACGTATCTACAGCTTCTACCTGTCCCCTGTGCTCCGTGCTGTGGATGTGGACTACATCCCCAActgctattactattactacttcAGGGTCAATGAGAACATGATATGTGCCGGATCTCGCTTTGGAGGCAAAGACTCTTGCCAAGGTGACTCAGGGGGACCTCTCATGTGCAATGGCTTTTTGGAAGGCATCGTGTCCTGGGGAATAGGCTGTGCCAATCCCTACTTCCCAGGCGTCTACACCAAAGTGAGGAATTACAACAAATGGATTACTGGGATCATCACAAGTGACAGTCAGTCCTAAAAATAATCAGGAAAGGTTTTAGTTTCAGACTAAACCCAAGTCTCAGTTATAAGGGACTTCAGCAACATGCATAGAAACCAATACGCTGGAATCATGTTAATTTATCTtgaactggggaaaaaaacagccttgGCATATATCCACATGCATAATTCATTAACTAATTAAAGGCTAGTAAGTTCTGCTGACACAGCAGTGTCTAGATTAATGATCATATAATGTCTAagcacattttaatttcatctatCATC
>XM_034312061.1
TAAGCGGTTGATGACGACTGTGTGTGCAGCAGGTGCTAACGATATGGCTCAGGTCTGGGGAGTAGTGATCTTTGTCCTAACTACGATGATCCGAGACTCACTGACCCAAAGGATCATTGGGGGCCAAGAAGTCGTGCCTCATTCCATCAAGTACCAAGCATCTCTACAGTATGAGAGAAATCACTATTGTGGAGGTATCCTGATCCACCAGCAATGGGTAGTGTCTGCTGCCCACTGCTGGAGACCGAGCAACATCATTCAAGTGGTTCTGAGCGCACATAATCTGGCAGTTGAGGACGGATCTGAGCAAGTGTTCAATGTGTCCAAGATCATATCCAACCCTACCTACAACCCGAAAACATATAATGGTGACATCATGTTCCTGAAGCTGAGCCACCCAGCTGTTCTAAACGCCTATGTCCAGCCGGCTCCTCTCCCGGATGACAGCACGCCTCCACTAGATGCTGGAACCACGTGCACAGTGAGCGGCTGGGGCGTCACACGTATCTACAGCTTCTACCTGTCCCCTGTGCTCCGTGCTGTGGATGTGGACTACATCCCCAActgctattactattactacttcAGGGTCAATGAGAACATGATATGTGCCGGATCTCGCTTTGGAGGCAAAGACTCTTGCCAAGGTGACTCAGGGGGACCTCTCATGTGCAATGGCTTTTTGGAAGGCATCGTGTCCTGGGGAATAGGCTGTGCCAATCCCTACTTCCCAGGCGTCTACACCAAAGTGAGGAATTACAACAAATGGATTACTGGGATCATCACAAGTGACAGTCAGTCCTAAAAATAATCAGGAAAGGTTTTAGTTTCAGACTAAACCCAAGTCTCAGTTATAAGGGACTTCAGCAACATGCATAGAAACCAATACGCTGGAATCATGTTAATTTATCTtgaactggggaaaaaaacagccttgGCATATATCCACATGCATAATTCATTAACTAATTAAAGGCTAGTAAGTTCTGCTGACACAGCAGTGTCTAGATTAATGATCATATAATGTCTAagcacattttaatttcatctatCATC
>XM_034312062.1
GGTTGATGACGACTGTGTGTGCAGGTGCTAACGATATGGCTCAGGTCTGGGGAGTAGTGATCTTTGTCCTAACTACGATGATCCGAGACTCACTGACCCAAAGGATCATTGGGGGCCAAGAAGTCGTGCCTCATTCCATCAAGTACCAAGCATCTCTACAGTATGAGAGAAATCACTATTGTGGAGGTATCCTGATCCACCAGCAATGGGTAGTGTCTGCTGCCCACTGCTGGAGACCGAGCAACATCATTCAAGTGGTTCTGAGCGCACATAATCTGGCAGTTGAGGACGGATCTGAGCAAGTGTTCAATGTGTCCAAGATCATATCCAACCCTACCTACAACCCGAAAACATATAATGGTGACATCATGTTCCTGAAGCTGAGCCACCCAGCTGTTCTAAACGCCTATGTCCAGCCGGCTCCTCTCCCGGATGACAGCACGCCTCCACTAGATGCTGGAACCACGTGCACAGTGAGCGGCTGGGGCGTCACACGTATCTACAGCTTCTACCTGTCCCCTGTGCTCCGTGCTGTGGATGTGGACTACATCCCCAActgctattactattactacttcAGGGTCAATGAGAACATGATATGTGCCGGATCTCGCTTTGGAGGCAAAGACTCTTGCCAAGGTGACTCAGGGGGACCTCTCATGTGCAATGGCTTTTTGGAAGGCATCGTGTCCTGGGGAATAGGCTGTGCCAATCCCTACTTCCCAGGCGTCTACACCAAAGTGAGGAATTACAACAAATGGATTACTGGGATCATCACAAGTGACAGTCAGTCCTAAAAATAATCAGGAAAGGTTTTAGTTTCAGACTAAACCCAAGTCTCAGTTATAAGGGACTTCAGCAACATGCATAGAAACCAATACGCTGGAATCATGTTAATTTATCTtgaactggggaaaaaaacagccttgGCATATATCCACATGCATAATTCATTAACTAATTAAAGGCTAGTAAGTTCTGCTGACACAGCAGTGTCTAGATTAATGATCATATAATGTCTAagcacattttaatttcatctatCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920704.2 True 1077 mRNA 0.47 6 21052670 21056506
XM_034312061.1 False 1056 mRNA 0.47 6 21052840 21056506
XM_034312062.1 False 1048 mRNA 0.47 6 21052845 21056506

Neighbor

gene id symbol gene type direction distance location
fam43b fam43b coding upstream 52938 20997669 ~ 20999732 (+)
vwa5b1 vwa5b1,LOC107599492 coding upstream 98699 20919088 ~ 20953971 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 149899 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 166161 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 300799 20737744 ~ 20751871 (+)
cdaa cda coding downstream 3270 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 6589 21063095 ~ 21067217 (+)
agmat agmat,LOC102790280,LOC105912720 coding downstream 11667 21068173 ~ 21073057 (+)
si:ch73-217b7.1 map7 coding downstream 81719 21138225 ~ 21171926 (+)
LOC113530738 si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918 coding downstream 145984 21202490 ~ 21212264 (+)
G258439 NA non-coding upstream 76311 20975898 ~ 20976359 (+)
LOC117599282 NA non-coding upstream 141588 20908816 ~ 20911082 (+)
G258362 NA non-coding upstream 262525 20786242 ~ 20790145 (+)
LOC117599266 NA non-coding upstream 340712 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 353002 20696985 ~ 20699668 (+)
G258460 NA non-coding downstream 28876 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 36823 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 47208 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 50841 21107347 ~ 21108015 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding downstream 58544 21115050 ~ 21132053 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 145211 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 538475 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 653956 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1347607 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1573775 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 171814 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 481539 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1614892 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2315238 23371744 ~ 23383653 (+)
G259993 NA other downstream 2331032 23387538 ~ 23389314 (+)

Expression


Co-expression Network