ddx23 (ddx23)


Basic Information

Item Value
gene id ddx23
gene name ddx23
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15364156 ~ 15391163 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920714.2
TGGCGGTAATGCACTAATTCAGTTTGCCAATTGTCAATACAAATCACAGAAGAAGACCAAGAGGACGACGACGacgacgaagaagaagaagaaggaacgCACAGCTTTCGTTAGCGGTTTATTTTCGACTTCAGGATGGCTGGTGATTCTTCTGAAAAAAGAGACCTGGATGTCTCCGGGAGTAAAGAGCGAAAACGTAGCCGCTCACGTTCCCGGGACCGTGATCGAAAGGGTTCTCCAGGGAAAGAACGCAAGCGCCATCGCTCACGTGAACGGAAACGATCACGAAGCCGCTCTAAATCTGCAGACAGAGATcgcagacagaaagacaaagaaagagacagagagaaggacagggaGAGAAGTCGTAAGGATCGGGACAGCCACAGAGGGGCCAAAGACAAGAATAAGAAATCCAGGAGCACTTCACCTAAATCCAAAGATACAAAaattaagagagaaaaagatgtgaagatggaggaagaagatcaggaagaaaagaaaaaagagaagGTTCAGCCATTGTCTTTGGAGGAGTTGCTGGCTAAGAAGAAAGCAGAGGAGGAGGCAGAGTCCAAgCCGAAGTTCCTGTCTAAGGCTGAACGAGAGGCAGAGGCTCTGAAACGCAGAGAGCAGCAGACAGAAGAACGGAGGCGGCAGATTGATgaggaaaggagaaaaaggagGGTTTTTCAGGATATTGGAAGGAAGATGTTGGAGGATCCTCAGGAGAGGGAGCGGCGTGAACGCAGGGAgcggatggagagagagagcaatggaAATGAAGATGATGAGAGTCGACAAAAAATAAGGGAGGAGAAGGACAAGGGCAAAGAACTTCAGGCAATCAAAGAGCGTTATCTAGGTGGAATGAAGAAACGGCGTCGCACAAGGCACCTCAATGATAGGAAGTTTGTGTTCGAGTGGGATGCTTCTGAGGACACGTCAATTGATTATAACCCATTGTATAAAGAGAAGCATCAGGTGCAGTTATATGGTCGAGGATTTATTGCAGGCATTGACCTCAAACAGCAGAAAAGAGATCAGTCTCGTTTCTATGGAGATCTGATGGAAAAGAGACGCACCATGGAggaaaaagaacaagaagaGCAGCGTCTGAAGAAGATGCGCAAGAAGGAGGCCAAGCAGCGCTGGGACGACAGGCACTGGTCTCAGAAGAAGCTGGATGAGATGACGGACAGGGACTGGAGAATCTTCCGGGAGGACTACAGCATCACTACTAAAGGAGGCAAAATCCCTAACCCCATCCGCAACTGGAAGGAATATGAGCTGCCCCCCCACATTCTGGAGGTCATTGACAAGTGCGGCTACAAGGACCCAACACCTATCCAGAGGCAAGCCATTCCTATTGGTTTACAGAACCGTGACATCATTGGTGTGGCCGAGACCGGTAGTGGTAAAACTGCGGCCTTCCTCATTCCCCTATTGGTCTGGATCACCACACTCCCCAAGATTGACAGGCTTGAGGATTCCGATCAGGGACCATATGCAGTGATTTTAGCCCCCACACGTGAGTTGGCCCAGCAGATTGAAGAAGAGACCATTAAGTTTGGCAAACCACTGGGCATTCGGACAGTGGCTGTGATTGGTGGAATCTCCAGAGAGGACCAAGGTTTTAGACTTAGGATGGGATGTGAGATAGTGATAGCCACACCTGGTCGTTTGATTGACGTGTTGGAGAATCGTTACCTGGTACTCAGCAGATGCACATACGTGGTACTGGATGAAGCCGACAGGATGATTGACATGGGTTTTGAACCTGATGTCCAGAAGATTTTGGAACACATACCTGTGACCAATCAAAAACCAGACACAGATGAAGCTGAAGATCCAGAGAAGATGACATTAAATTTTGAGTCtggaaaacacaaatacagacagaCAGTCATGTTTACAGCCACTATGCCTCCTGCTGTTGAGCGATTGGCCAGAAGTTACCTGAGGCGCCCTGCTGTGGTCTACATTGGTTCTGCAGGTAAACCACATGAGAGAGTGGAACAGAAGGTTATTCTGATGTCAGAAGCAGAGAAGagGAAAAAGCTTTTGGAAGTCCTGTCACGTGGCTTTGAGCCTCCCATCATCATTTTTGTTAACCAGAAGAAAGGGTGTGACGTATTGGCCAAGTCCCTGGAGAAAATGGGGTACAATGCTTGTACACTTCATGGTGGTAAAGGACAAGAGCAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCTGGAGCCAAGGATATCCTGGTGGCCACGGATGTTGCAGGAAGAGGTATTGATATCCAGGATGTCTCCATGGTTATCAACTATGACATGGCCAAGAATATTGAGGACTATATCCATCGTATTGGCCGAACGGGTCGTGCTGGAAAGAGTGGGGTAGCTATGACCTTCTTGACCAAAGAGGATTCGTCGGTGTTCTACGACCTGAAGCAGGCCATACTGGAGAGTCCTGTATCTACATGCCCGCCTGAGCTCGCCAACCATCCTGACGCCCAGCATAAGCCTGGCACCATTCTCACCAAGAAAAGGAGGGAAGAAACCATCTTTGCCTGAAATGCAAACATGACTTCAGTCATACTTGACACTGTTGGATATCTccgtctttttctctttccattattctattctctctcttcatatcCATGCAGTTAATCTCTGTCTCATGACTGTAATGGCTTTCTCATTTCATTCTCCATTTGATTCTGTGTACATCTTTTTTCAGTGATGGCCACAGATCACTGTAGTCATATACTGTTATTTGGCAGAATACAATCACATGCACCATTGACATGAACAGTAGTACAAGCATATGTTTTCTCTTTTATATTGTTTGTAAATGATTACtcatttaatattgtgtaaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
ddx23 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human DDX23 (DEAD-box helicase 23).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX23

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12858 DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920714.2 True 2894 mRNA 0.46 18 15364156 15391163

Neighbor

gene id symbol gene type direction distance location
soga1 soga1 coding upstream 311765 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 391165 14899630 ~ 14972991 (+)
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding upstream 487253 14868292 ~ 14876903 (+)
prkcbp1l LOC108276073 coding upstream 499504 14848555 ~ 14864652 (+)
si:ch211-220i18.4 LOC108275527 coding upstream 529929 14825582 ~ 14834227 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding downstream 8643 15399806 ~ 15405647 (+)
LOC113530581 NA coding downstream 128179 15519342 ~ 15540730 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 504480 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 585733 15976896 ~ 16034838 (+)
baz2a baz2a coding downstream 668149 16059312 ~ 16173060 (+)
G255227 LOC108275774 non-coding upstream 106421 15247697 ~ 15257735 (+)
G255229 NA non-coding upstream 124920 15229733 ~ 15239236 (+)
LOC117599280 NA non-coding upstream 186934 15175584 ~ 15177222 (+)
G255218 NA non-coding upstream 268537 15093813 ~ 15095619 (+)
G255198 NA non-coding upstream 309685 15054109 ~ 15054471 (+)
G255507 NA non-coding downstream 63792 15454955 ~ 15455317 (+)
G255645 uckl1 non-coding downstream 220762 15611925 ~ 15623220 (+)
G255649 NA non-coding downstream 261683 15652846 ~ 15657627 (+)
G255650 NA non-coding downstream 266614 15657777 ~ 15658142 (+)
LOC113530859 NA non-coding downstream 432125 15823288 ~ 15825452 (+)
rps21 rps21,LOC107666483 other upstream 196488 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 690204 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1291940 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2394147 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2509776 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 818927 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 840850 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 972383 16363546 ~ 16396245 (+)
G256046 NA other downstream 1116862 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1679973 17071136 ~ 17124951 (+)

Expression


Co-expression Network